NONHSAT009270
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009270 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3617 nt |
Genomic location |
chr1-:210851657..210855274 |
Exon number |
1 |
Exons |
210851657..210855274 |
Genome context |
|
Sequence |
000001 ATGTGCTTGG GCTTCTCTCA ATGGCATCTG AGAAAGGAAA GGAGTGAAGT CTCTTCCAGG CACAGTGGAG CTGGCCGGGG 000080
000081 CATATGCCCT AGAGAGAGGT GTCAGGACCC CAAATACTGA CACGCAAGGT TAGAAGTTCA GCTCTGAAAA GTCAACTTGG 000160 000161 AGGGAATGGA ATTAGGAGTA CAGGTGACAG CATGGACTTA TCCAGGGAGC TTACCTTTGC CTGTGTTAGA CGGTGACCCC 000240 000241 ATTCCTGGTA CCTCTGCCCT ACCAAAGATA TTCAGTGTTT CTGAGAGCCT CCGGTCTGAG ACTGCCCACC ACCCCACCCC 000320 000321 ACCCCACCTC CTTAGTCCTG CCCAGTGCTC ACGGCGAGTC CCAGGGCTGG GCCCTCGGTT GTCTGTGCAA GGCAGGGCTG 000400 000401 ACCTCTCCTG GTTCGCAGGG TTGGCACAGA TGGCCCTGGG AAGACAAGGC CTGCGAGCTC AAGGGAGAGT CCTGCTCCAT 000480 000481 GAGCCCTAAC CTCATATGTA GCTTCTCACA TCAGGCTTAC AGGGGCTGCC CCTGGCTTCT CCAGGTTGCG ACATAATTAG 000560 000561 ATTTAGCCTC AGATGGCGGC ATACAAGTAA GAGGAAGTCT AATTTCCTAA GGCCGAGTCA CAACTATCTG TGACTTTGAA 000640 000641 TAAAGCTGTG AGGCCTTCAG CCTCTTTCAC TTGAGAAGCT GCCAACCAGT CCTTGGGTAA GAGGCCGTAA AATATCTGGA 000720 000721 ATCCCATCTG TTGGCTGCCC CCTAACATTC TAGTCTGCCA TTTCTTAAAC ATGCTCCTCA ACCTGCTTCT GAAGTTTAGG 000800 000801 ACCCACCACT TTTAAGGCAG GGCAGGCCTC TAATCACCCC CAAAACCCAG CCTCAGAAGA ACCTGCCACT GGAGACACTT 000880 000881 TTTTGCCTCT CAGCTCTCCA GGGACTTGAT GACAGGCTTC TTGTCCGGCA CCCAACGGTC AATGTCAAGA GGCCCTGCCA 000960 000961 TTTCCCTCCA GCTCTGCCTG AGGGAGACGG ATGTCCGTGA AATTTCTCAG ACCTCTGGGT ATGAGGGGCA AAGATGGTAT 001040 001041 AAGGCTTTGA AGTCCAGACA TGTTCTTGGG GGGAATGTAG CTTTAGGAAT GCACTCGTGA ATCAGCGCAA ACTGGGCTCA 001120 001121 TGACTGGAAG CCAGCTCCTG CGGCAGGAAT CTGTTCATCT TGGGTCACAG GTGCACGTGT GGGTGCATGG GCTTTATTCT 001200 001201 CCTGTAATCC TCCCTAGGAT TTGAGGGATT TTTTGCTGTA ATTGTTTTCT TTGAAAAAAC ATTGTGTAAA TGAGCCAAAC 001280 001281 CTTTCTCCCT TCCTTTTCGC ACCATGAACT TGACCGCAGG CTGCTTTGTG CTGACTGCCT TCCCATGCCA GGATGCCACT 001360 001361 CTGGGTTCCC GAGCCAGGAC CATGTGCCTC AGATACCAGT GACCTGAGCC TTCCAGTATA AACCATTATC TGGTGGCTGG 001440 001441 AGAGAGATTA GGGAAACAAA AAGTTACTAG GTATGGGACA GAACATTTAG ACTTCAGAAA AAGTATGCCA AGAGAGAACA 001520 001521 GATTTGCCCA GGATGTATGT TTTTCCTCTT TGAGGAGTCG GGGCATGATA TGTGGCACCA TTATCTAGTA AGTGCTGGTT 001600 001601 ATTTGATTTC TACTAAATTC TTTACTTTGA ATGTCATTCA TATTGAAGCT CCATTTCCCA GAGAATATCC TGACAGGCTG 001680 001681 CTTTGAAGAG GGTAGGTCCT GTCCCTGTCA CTTGGCTGCT GGTTGAACGT GCTCCTCCCG GCTGATGGAG GGGTGGGTTT 001760 001761 AAGGTTAACT CTAAGAACTA AGATGGTCAA TGAGGTGGTG TTTGTTCTTG GTGGGGGGGC ATTGACTCCA GCAATGGGCG 001840 001841 CTGCCATCCC ATATACTTAC AAAGGGCTCC TCCACTGGAC ATGACAAGAT AGCCAAAGGA CGGAAACAGA GACGATCATT 001920 001921 TGGTTGAGAA ACCAAATTGT CTAGTGTACA ATTAATGCAA CTCATTGCAT TCATGAATGC AACTCATTGC ATTAATGCAA 002000 002001 TGCTACATTA TGCTAATAAG GTTACAACAT TAATGCTACA GGATAGCCCA AGTATTTAAA AAGCTGAGCC CATTTAGCAG 002080 002081 CCTTCCAGCA AACTTTTGGA AATGCATTTC TTACTTGATT TCTTCTTGTT ATCCAATCCC TGGGGACCGT TTTACCCACA 002160 002161 ACCTCTTCGA TCCAGTGTGC TGCTGTTGGC CAAACATCAG CCCCTTTCCT GGAATCCTCC TCTTTCAAAA GTGGGGAGGG 002240 002241 CTGGGCAGGG GTAAAAATGT ACTATACCAC CCCATCCCAT TCAGCAAGCT TCCTCTCCAA ATCCTTAAAT GGAAGGTAGA 002320 002321 AGTATTATGC CAACTGTCAA GCTCTTTGTC CAGGCCCTTG TGGGGACTAA ATGAACTCTT TAGGAATACT AGGTATAGGA 002400 002401 AGACTAGGTA TAGGAAGATT CTCATTTCCC CTTGTTGCAC TGACCACTAT GTCTCCCATG CATACTCTGG GAAATTTTAG 002480 002481 GAGCCCTGGT GGAGATACAC GTTGCTGATG TGCATTTGAT TAATAGGTTT TACTATGTCT TGCAATAAAG ACGTTTAGCC 002560 002561 TTAAGACCCT TGAATGGAAC TCCAGCTGTG ATAGAGCTGC CAATGCCCCT TCCTCTCTCC TCCCTTATCA CCTAGTGTTG 002640 002641 CTTAAAGAGG AGGCCATTGA GGGCACACTT GATGCCCCAG ACAGCCTCCC TCTGTTGCTA AATCATTGTT ATTGCTCTAT 002720 002721 ATACTGCCTT CTCACTCGCT TCAATTAAAA ATTACCTTCA CCAGCTGCTG TGCCCTCCAC CTGGGGGAGA CTTCATGATC 002800 002801 CTCTCAGCAC TGACTGCAAA CATCAGAGAA AAAAACATTT TCTCACCAAA GGTGTTCATG TTGAGAAGTT TTAATTTCTA 002880 002881 CCCCCTACAG CTCAAAAGAA TCAATGTGAA TTTATCTGCA GCTTAAATTC AAGTGAAACT TCATTCTCAT GCAAGCATAT 002960 002961 CAGACTTATT CTGGAACCTC TAGAACTGGA CTTGAATTCC CTGCAGGTGC CAGACTGGTG GGTGCCCTCC CTGCCTGCCA 003040 003041 TTAAACTTTT CTTACAGCCA CTGTCCCTTT ATCTGTGACT TCTGAGTCAT CCGACGGATC CATTAGTTGT TCAATGAGAA 003120 003121 GTTCACAGAT CTTGTATCAG GATATAAACT GATCTTATGT TGAAGGATGC ACCCTCCCCT AATGAATGTA TTCTCTTAAT 003200 003201 ATTCCGATGC TGTATTTGTG CATCAGTTGG AGACTGTCCA CATCCGACAT TTCACCGACA CCTCAAGGAC ACTTCTACTT 003280 003281 ATGAGCAGTT CATCATTCTG GGGCTTCTCC TTATATTAAT ACTCTTTCCA TTGAGTCCTG CCAAATCCTT TATTGGGTTT 003360 003361 TCTTTTTCCT TTGCATCTGT CACTTTGTCC AAATGAGCAT GAATAAACAA AAGTGTAAAT GAGCTGATAC TATTTTTGTG 003440 003441 GTCAGCTGAG GATGCTGCCA AGAACACCAC TGTATATCTG TGGCTTGGGA ATGTTAAGAG GAACGTGCAG GCCCTTCCAT 003520 003521 TGATGATATT CCCTTCTCAA CATTTTTAAA CAAGCACAAA TGATATTTGT AAAAAAAAAA GTTTTATTTA TTATGGTAAT 003600 003601 AAACTATTTT ATACATG |
Predicted Small Protein
Name | NONHSAT009270_smProtein_908:1099 |
Length | 64 |
Molecular weight | 6954.8672 |
Aromaticity | 0.0634920634921 |
Instability index | 62.6285714286 |
Isoelectric point | 10.0123901367 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0416887475712 |
Amino acid sequence | MTGFLSGTQRSMSRGPAISLQLCLRETDVREISQTSGYEGQRWYKALKSRHVLGGNVALG MHS |
Secondary structure | LLLEELLLLLLLLLLLEEELLLLLLLLLLEEEELLLLLHHHHHHHHHHLLLLLLLLEEEL LLL |
PRMN | - |
PiMo | - |