NONHSAT009288

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT009288

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4958 nt

Genomic location

chr1+:211499957..211538851

Exon number

6

Exons

211499957..211500015,211526581..211526799,211527752..211527809,211529709..211534121,211534430..211534504,211538718..211538851

Genome context

Sequence
000001 AGACGCACGT GAGGGAAATC AGATGACTGG ACTTGTAGAT ACTAACGGTT CTGAAGCGGA ATGGCTTATT CAGAAGAGCA 000080
000081 TAAAGGTATG CCCTGTGGTT TCATCCGCCA GAATTCCGGC AACTCCATTT CCTTGGACTT TGAGCCCAGT ATAGAGTACC 000160
000161 AGTTTGTGGA GCGGTTGGAA GAGCGCTACA AATGTGCCTT CTGCCACTCG GTGCTTCACA ACCCCCACCA GACAGGATGT 000240
000241 GGGCACCGCT TCTGCCAGCA CTGCATCCTG TCCCTGAGAG AATTAAACAC AGTGCCAATC TGCCCTGTAG ATAAAGAGGT 000320
000321 CATCAAATCT CAGGAGGTTT TTAAAGACAA TTGTTGCAAA AGAGAAGTCC TCAACTTATA TGTATATTGC AGCAATGCTC 000400
000401 CTGGATGTAA TGCCAAGGTT ATTCTGGGCC GGTACCAGGT TGGTATTACT CATGAACGAT ATCTGCTTTT GCCATTTTTC 000480
000481 CAGGAATGTG TGTTGAACCC CTTTATGTGA CAGTTACTGA GCTAAGCATG GTACAGGGAT TCAGTGAATT GCCCTCAAGG 000560
000561 ATTCCCAGTC TAGCAATACA GGTGGCTACA GTGCTGTAGC CCACCTACGG CTGAGGTGTG AGTGAAGAGG TTCGTCCTGT 000640
000641 ATGGAGCGCA TGGAGGACAT CTTGTATCCA CTAGACCTTA ATTGTGTGGT AGGGATCATT GAGCCAAAAG AGAGGGCGTG 000720
000721 GGACATGCTG GACAAAACAA ACACTCAAGA ATATGCCATT TTGGGGGAAC TGTGTGGGAC CCAGGGCATG ACTACAGAAA 000800
000801 GACACAATTG TGAGGTCCTT CCCCAAAAGC ATTTGCTCTC TCACTTGGTG CTGTCGTAGG TGTTTCCCAG CAACTGTGGG 000880
000881 ACCTGGCCTC ATGGGGTTTA TGATCTAACG GAGATCACTC AGACCAGGAC AGAGACAGGC TGTGGGTTAA AGGTGAAGCA 000960
000961 TTGATAGGAG AGACAAACCA ACAAGGTGTA GGGGAAATGT GAGTGAAGGG GAATTGATGC CTTTCAAATG AAGTGACCCC 001040
001041 AGCTGCTCTT CCTTCCAGCT AGGGAAGGTG GTTAAAGGGG AAGCTGGAAG TGTGGCGCTG CCTGGCAGGC CCATGTCAAG 001120
001121 TTTGATCACA CTGCAAGTGA ACATGACTCA GGCTTCTCTA ACTTCTAGGG AATTGCTGAG AGGCTGCTGA AATTTCTCCC 001200
001201 GCACACCCAC ACATTTTGGA ACACATATTT CAGATGATTC AGTCTTTTCT CTATCACACC TCCAAATCCC TCAGGGACTG 001280
001281 AGCTTATAAA TGTGTAAATG ATTTCCTTGT TAATCCAGGA ATTTATTTGG AGGTTCATAG AACTTTTGTT ATGTTTTCAT 001360
001361 GTGTCTTTTG CCCCTTGTTT TGAATAGTCG AGTCCTAGAG CAAGGCCTTT TTTCCAACTT TGTTGTCACT AAGCCTAAAA 001440
001441 AGTAAGTGAG GCTCAAATGG ACCATTGAAC AGCTTTAGTG ACCAAAACTG GCTTATGGAG AGCAGGGCCT GGGTTCTCTC 001520
001521 CACCTGTTTC TTTTATATTT CCCCTCATTC CTTGTTTCCC ACCCACCCAC TTCTATGGTA AGGTGTAGAA TCTTACAGGT 001600
001601 AGCAGAGTTT TGATGAATGT TGACTGTTTG GGTGAGAGTT GAGGAGTAAT ATCAACCAAT TTTGGAGAAG AGATGGATTC 001680
001681 CAACTGTGAT CACCATATGA TTCTTACTAC CAGAGGTGAA GGAGAATAGC TGCATTTGTT TATCTCACTG TCAAAAAACT 001760
001761 GTTTGCTTTT TCTTCTGAGA AGGGATCAGC AAACTCTCTT AAGAGTCAAA CAATAATAAT AATAATCATC ATCATAATCA 001840
001841 TAaaagagcc agatagtaac tattttaggc tttgcaggcc atacagtctc tgtcacaatt actcagctct cccattttag 001920
001921 aggcaaagca gctatagaca atatgtgaag gaataggtgt ggctcctctc caataaaact ttaattataa aaacaagtag 002000
002001 caggccagat ttggcctgtg agtcttagct tgccaaTTTT GTCTTAAAGG ACCCTCAGGG GGACAAGTTC TCTAACATTT 002080
002081 TGTTAACTTG CCAGCATCAC AATAACTGCA GTGATTCAAA GGTTTTCACT GAGATATGCC TGCTTTTAAA CCTCTAGAAT 002160
002161 GTTggccagg cgtggtggtt catgcctgta ataccagcac tttgggaggc cgaggtgggc agattactgg agatcaggag 002240
002241 tttgagacca gcctggccaa tgtggcaaaa ccctgtcttt actaataata caaaaattag ccgggcatgg tagctggtgt 002320
002321 ctgtaatccc agctacttgg gaggctgagg caggagaatc gcttgaaacc tgggaggcgg aggttgcagt gagccaagat 002400
002401 tgcgccactg cacttcagcc tgggtgacgg tgcgagactc tgtctaaaaa aaaaaaaaaa caaaaaaaaa CCTAGAATGT 002480
002481 ccagcctggc caacatggtg aaaccctgtc tctactaaaa atacaaaaat tagctgggtg tggtgcacac ctgtaatccc 002560
002561 agctaatctg gaggctgagg cacaagaagc tcttcaaccc aggaggtgga ggttgcagtg aacggagatt gcgccacttc 002640
002641 actccagctt gggtgacaga gagagaccct gactcaaaaa taaaattaaa aaaaataaaa TAGAATGTGA AGAACCCTGG 002720
002721 AATGAACACT GTCCATGTAA TCATTCTCTA atattaaata atattaaata gtatatatag ttatatatta catataatat 002800
002801 attaaatact ataatatatt gtttataata aatacattat TGACATGtaa ataaatgttt atttttaata ataaataaca 002880
002881 gaatatttaa aataactttt aaaataaaat tagagaatat ttaaaataaa atttaaataa cttattattt Gtgttaccta 002960
002961 ggctggagcg cagtggcaca atcatagctc actgcagcct caaacttctg gactcaactg atcctcccac ctcagcctcc 003040
003041 tgtgtagttg ggaccatagg tgtacaccgc aacacttggc taattaaaaa aaaaaaattg tggagacaag gtattggggt 003120
003121 ctcactgtgt tgcccaggct ggacttgagt cctggcctta agtgatcctc ccatctcagc ctcccaaatt tctgggatta 003200
003201 caagcatgag ccaccacacg tggccAATAA AGTATTATTA ATGGTTAAAA ATATTTCCTG ACTTTACCAG TCTGACCATT 003280
003281 CCTAGCTTCT CTTGGGCTTG CACACCTATA TTTCCTCTGC CTCCTTTTCT TTATCATTTC TGGAATAGCT TACTGTCCCT 003360
003361 TCTTTTCATC TTCTTAATCC TTTCCCTTTC TTCCTTGAGT TAGGATATGC CCTTCTCTCC TTTTTTCCTT TTCCTGTGTC 003440
003441 CTTTTACCAT CTGCTATGCA GAGACCCATA CCTGATGCTG GAGGTTGGGA TGAAGAGTCC ACAAAAGAAA TAAAAATGTC 003520
003521 CTTGAAGAAC TGGTAAATTA AGGAAAATAT CCAAGAACTA ACCTGAGAAT ATGAGCACAT TATTAGATCA TCTAAAACAA 003600
003601 ACTTGGTGTA CTTCCCTCTT CACCTATCTT CCCCTGTCCT CTGAATTTCC CCCAGCCAAG ACTGGCTTTC CCATCTCTGG 003680
003681 TACAAGCAGC CCTCCCCATG CCCTCTCCTC AGCAGAGACA GTGGGCAGCA TCCCCTGAGA GCCTACCCTC TGCCTTGCCC 003760
003761 TGTGCAAGCC TTTCTGCCCA GCTGCCCACC CTGTTCTCTC TCCCTCCCTA GGCCTTCCAG CTGACTTCTT TCCTACCACC 003840
003841 CTGGTCAGCA GGTCCCACTG GCCTGTTGTT ATCTGTTGCA GGATCACCTT CAGCAGTGCT TATTTCAACC TGTGCAGTGT 003920
003921 TCTAATGAGA AGTGCCGGGA GCCAGTCCTA CGGAAAGACC TGAAAGAGCA TTTGAGTGCA TCCTGTCAGT TTCGAAAGGA 004000
004001 AAAATGCCTT TATTGCAAAA AGGATGTGGT AGTCATCAAT CTACAGGTGA AAAACAACAC ATACAACAGT CATCTTTATG 004080
004081 GAGCTAAATT ATGCCTGAGT GGTCACAGTG AATCAGGTGG AATGCCAGAA GAACATTCCT GCATTTATTT TTGTACAGAA 004160
004161 TTAGGTCTAA AGAATTTGCT TTTTGGAGAG AAGTTCTGTG AAAAGCTTAA AACCTTCTTG TTGGTAGCAC TCCATTTATT 004240
004241 ATTGGCAAAA ATATTATTTG AACACATGCT GTGTATGTGT AATGAATGCT GGGTGCTGAG TCACAAGGAG GTGACAATAA 004320
004321 TGTCTACTCT CTGAATTCTG CAGTGTAGCT GGGGAGGCAG GATGCAGGCA TAAAAAGAAA GCATGGGTAC CTTTTACATG 004400
004401 TCCCGAAGGA GCTATGCTGG CAGTTCCCCA ATCTACCTTC TTTGAATCCT GTGTTCTATG ACTTTCTTTT GGAATAATTG 004480
004481 Gaaaatttaa tattttaatt aaGTTCATTT ACACCTAGAA AGTGGACATC TTTAATCCTT TTTTGGAATT AGGCAATAAC 004560
004561 TTCCTGTAGA GAGTAAGCCA CGTGACATAT AATCCCCAAA GAGACACAGG TGTAATCACT GTGAGGCCAT GAAAGACAAC 004640
004641 CCTTTGTTTT ATTGCACTTT CTCTATTTCA GAATCATGAG GAAAACTTGT GTCCTGAATA CCCAGTATTT TGTCCCAACA 004720
004721 ATTGTGCGAA GATTATTCTA AAAACTGAGG TAGATGAACA CCTGGCTGTA TGTCCTGAAG CTGAGCAAGA CTGTCCTTTT 004800
004801 AAGCACTATG GCTGTGCTGT AACGGATAAA CGGAGGAACC TGCAGCAACA TGAGCATTCA GCCTTACGGG AGCACATGCG 004880
004881 TTTGGTTTTA GAAAAGAATG TCCAATTAGA AGAACAGGTA AATCTTCAAA GGTTCAAATA AAAAGTGAGG CAACAGAA
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Predicted Small Protein

Name NONHSAT009288_smProtein_4121:4333
Length 71
Molecular weight 8178.8679
Aromaticity 0.1
Instability index 53.3228571429
Isoelectric point 6.02642822266
Runs 7
Runs residual 0.0448373408769
Runs probability 0.0195699901582
Amino acid sequence MPEEHSCIYFCTELGLKNLLFGEKFCEKLKTFLLVALHLLLAKILFEHMLCMCNECWVLS
HKEVTIMSTL
Secondary structure LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEEL
LLEEEEEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL
LLLLLLLLLL
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