NONHSAT009288
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4958 nt |
Genomic location |
chr1+:211499957..211538851 |
Exon number |
6 |
Exons |
211499957..211500015,211526581..211526799,211527752..211527809,211529709..211534121,211534430..211534504,211538718..211538851 |
Genome context |
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Sequence |
000001 AGACGCACGT GAGGGAAATC AGATGACTGG ACTTGTAGAT ACTAACGGTT CTGAAGCGGA ATGGCTTATT CAGAAGAGCA 000080
000081 TAAAGGTATG CCCTGTGGTT TCATCCGCCA GAATTCCGGC AACTCCATTT CCTTGGACTT TGAGCCCAGT ATAGAGTACC 000160 000161 AGTTTGTGGA GCGGTTGGAA GAGCGCTACA AATGTGCCTT CTGCCACTCG GTGCTTCACA ACCCCCACCA GACAGGATGT 000240 000241 GGGCACCGCT TCTGCCAGCA CTGCATCCTG TCCCTGAGAG AATTAAACAC AGTGCCAATC TGCCCTGTAG ATAAAGAGGT 000320 000321 CATCAAATCT CAGGAGGTTT TTAAAGACAA TTGTTGCAAA AGAGAAGTCC TCAACTTATA TGTATATTGC AGCAATGCTC 000400 000401 CTGGATGTAA TGCCAAGGTT ATTCTGGGCC GGTACCAGGT TGGTATTACT CATGAACGAT ATCTGCTTTT GCCATTTTTC 000480 000481 CAGGAATGTG TGTTGAACCC CTTTATGTGA CAGTTACTGA GCTAAGCATG GTACAGGGAT TCAGTGAATT GCCCTCAAGG 000560 000561 ATTCCCAGTC TAGCAATACA GGTGGCTACA GTGCTGTAGC CCACCTACGG CTGAGGTGTG AGTGAAGAGG TTCGTCCTGT 000640 000641 ATGGAGCGCA TGGAGGACAT CTTGTATCCA CTAGACCTTA ATTGTGTGGT AGGGATCATT GAGCCAAAAG AGAGGGCGTG 000720 000721 GGACATGCTG GACAAAACAA ACACTCAAGA ATATGCCATT TTGGGGGAAC TGTGTGGGAC CCAGGGCATG ACTACAGAAA 000800 000801 GACACAATTG TGAGGTCCTT CCCCAAAAGC ATTTGCTCTC TCACTTGGTG CTGTCGTAGG TGTTTCCCAG CAACTGTGGG 000880 000881 ACCTGGCCTC ATGGGGTTTA TGATCTAACG GAGATCACTC AGACCAGGAC AGAGACAGGC TGTGGGTTAA AGGTGAAGCA 000960 000961 TTGATAGGAG AGACAAACCA ACAAGGTGTA GGGGAAATGT GAGTGAAGGG GAATTGATGC CTTTCAAATG AAGTGACCCC 001040 001041 AGCTGCTCTT CCTTCCAGCT AGGGAAGGTG GTTAAAGGGG AAGCTGGAAG TGTGGCGCTG CCTGGCAGGC CCATGTCAAG 001120 001121 TTTGATCACA CTGCAAGTGA ACATGACTCA GGCTTCTCTA ACTTCTAGGG AATTGCTGAG AGGCTGCTGA AATTTCTCCC 001200 001201 GCACACCCAC ACATTTTGGA ACACATATTT CAGATGATTC AGTCTTTTCT CTATCACACC TCCAAATCCC TCAGGGACTG 001280 001281 AGCTTATAAA TGTGTAAATG ATTTCCTTGT TAATCCAGGA ATTTATTTGG AGGTTCATAG AACTTTTGTT ATGTTTTCAT 001360 001361 GTGTCTTTTG CCCCTTGTTT TGAATAGTCG AGTCCTAGAG CAAGGCCTTT TTTCCAACTT TGTTGTCACT AAGCCTAAAA 001440 001441 AGTAAGTGAG GCTCAAATGG ACCATTGAAC AGCTTTAGTG ACCAAAACTG GCTTATGGAG AGCAGGGCCT GGGTTCTCTC 001520 001521 CACCTGTTTC TTTTATATTT CCCCTCATTC CTTGTTTCCC ACCCACCCAC TTCTATGGTA AGGTGTAGAA TCTTACAGGT 001600 001601 AGCAGAGTTT TGATGAATGT TGACTGTTTG GGTGAGAGTT GAGGAGTAAT ATCAACCAAT TTTGGAGAAG AGATGGATTC 001680 001681 CAACTGTGAT CACCATATGA TTCTTACTAC CAGAGGTGAA GGAGAATAGC TGCATTTGTT TATCTCACTG TCAAAAAACT 001760 001761 GTTTGCTTTT TCTTCTGAGA AGGGATCAGC AAACTCTCTT AAGAGTCAAA CAATAATAAT AATAATCATC ATCATAATCA 001840 001841 TAaaagagcc agatagtaac tattttaggc tttgcaggcc atacagtctc tgtcacaatt actcagctct cccattttag 001920 001921 aggcaaagca gctatagaca atatgtgaag gaataggtgt ggctcctctc caataaaact ttaattataa aaacaagtag 002000 002001 caggccagat ttggcctgtg agtcttagct tgccaaTTTT GTCTTAAAGG ACCCTCAGGG GGACAAGTTC TCTAACATTT 002080 002081 TGTTAACTTG CCAGCATCAC AATAACTGCA GTGATTCAAA GGTTTTCACT GAGATATGCC TGCTTTTAAA CCTCTAGAAT 002160 002161 GTTggccagg cgtggtggtt catgcctgta ataccagcac tttgggaggc cgaggtgggc agattactgg agatcaggag 002240 002241 tttgagacca gcctggccaa tgtggcaaaa ccctgtcttt actaataata caaaaattag ccgggcatgg tagctggtgt 002320 002321 ctgtaatccc agctacttgg gaggctgagg caggagaatc gcttgaaacc tgggaggcgg aggttgcagt gagccaagat 002400 002401 tgcgccactg cacttcagcc tgggtgacgg tgcgagactc tgtctaaaaa aaaaaaaaaa caaaaaaaaa CCTAGAATGT 002480 002481 ccagcctggc caacatggtg aaaccctgtc tctactaaaa atacaaaaat tagctgggtg tggtgcacac ctgtaatccc 002560 002561 agctaatctg gaggctgagg cacaagaagc tcttcaaccc aggaggtgga ggttgcagtg aacggagatt gcgccacttc 002640 002641 actccagctt gggtgacaga gagagaccct gactcaaaaa taaaattaaa aaaaataaaa TAGAATGTGA AGAACCCTGG 002720 002721 AATGAACACT GTCCATGTAA TCATTCTCTA atattaaata atattaaata gtatatatag ttatatatta catataatat 002800 002801 attaaatact ataatatatt gtttataata aatacattat TGACATGtaa ataaatgttt atttttaata ataaataaca 002880 002881 gaatatttaa aataactttt aaaataaaat tagagaatat ttaaaataaa atttaaataa cttattattt Gtgttaccta 002960 002961 ggctggagcg cagtggcaca atcatagctc actgcagcct caaacttctg gactcaactg atcctcccac ctcagcctcc 003040 003041 tgtgtagttg ggaccatagg tgtacaccgc aacacttggc taattaaaaa aaaaaaattg tggagacaag gtattggggt 003120 003121 ctcactgtgt tgcccaggct ggacttgagt cctggcctta agtgatcctc ccatctcagc ctcccaaatt tctgggatta 003200 003201 caagcatgag ccaccacacg tggccAATAA AGTATTATTA ATGGTTAAAA ATATTTCCTG ACTTTACCAG TCTGACCATT 003280 003281 CCTAGCTTCT CTTGGGCTTG CACACCTATA TTTCCTCTGC CTCCTTTTCT TTATCATTTC TGGAATAGCT TACTGTCCCT 003360 003361 TCTTTTCATC TTCTTAATCC TTTCCCTTTC TTCCTTGAGT TAGGATATGC CCTTCTCTCC TTTTTTCCTT TTCCTGTGTC 003440 003441 CTTTTACCAT CTGCTATGCA GAGACCCATA CCTGATGCTG GAGGTTGGGA TGAAGAGTCC ACAAAAGAAA TAAAAATGTC 003520 003521 CTTGAAGAAC TGGTAAATTA AGGAAAATAT CCAAGAACTA ACCTGAGAAT ATGAGCACAT TATTAGATCA TCTAAAACAA 003600 003601 ACTTGGTGTA CTTCCCTCTT CACCTATCTT CCCCTGTCCT CTGAATTTCC CCCAGCCAAG ACTGGCTTTC CCATCTCTGG 003680 003681 TACAAGCAGC CCTCCCCATG CCCTCTCCTC AGCAGAGACA GTGGGCAGCA TCCCCTGAGA GCCTACCCTC TGCCTTGCCC 003760 003761 TGTGCAAGCC TTTCTGCCCA GCTGCCCACC CTGTTCTCTC TCCCTCCCTA GGCCTTCCAG CTGACTTCTT TCCTACCACC 003840 003841 CTGGTCAGCA GGTCCCACTG GCCTGTTGTT ATCTGTTGCA GGATCACCTT CAGCAGTGCT TATTTCAACC TGTGCAGTGT 003920 003921 TCTAATGAGA AGTGCCGGGA GCCAGTCCTA CGGAAAGACC TGAAAGAGCA TTTGAGTGCA TCCTGTCAGT TTCGAAAGGA 004000 004001 AAAATGCCTT TATTGCAAAA AGGATGTGGT AGTCATCAAT CTACAGGTGA AAAACAACAC ATACAACAGT CATCTTTATG 004080 004081 GAGCTAAATT ATGCCTGAGT GGTCACAGTG AATCAGGTGG AATGCCAGAA GAACATTCCT GCATTTATTT TTGTACAGAA 004160 004161 TTAGGTCTAA AGAATTTGCT TTTTGGAGAG AAGTTCTGTG AAAAGCTTAA AACCTTCTTG TTGGTAGCAC TCCATTTATT 004240 004241 ATTGGCAAAA ATATTATTTG AACACATGCT GTGTATGTGT AATGAATGCT GGGTGCTGAG TCACAAGGAG GTGACAATAA 004320 004321 TGTCTACTCT CTGAATTCTG CAGTGTAGCT GGGGAGGCAG GATGCAGGCA TAAAAAGAAA GCATGGGTAC CTTTTACATG 004400 004401 TCCCGAAGGA GCTATGCTGG CAGTTCCCCA ATCTACCTTC TTTGAATCCT GTGTTCTATG ACTTTCTTTT GGAATAATTG 004480 004481 Gaaaatttaa tattttaatt aaGTTCATTT ACACCTAGAA AGTGGACATC TTTAATCCTT TTTTGGAATT AGGCAATAAC 004560 004561 TTCCTGTAGA GAGTAAGCCA CGTGACATAT AATCCCCAAA GAGACACAGG TGTAATCACT GTGAGGCCAT GAAAGACAAC 004640 004641 CCTTTGTTTT ATTGCACTTT CTCTATTTCA GAATCATGAG GAAAACTTGT GTCCTGAATA CCCAGTATTT TGTCCCAACA 004720 004721 ATTGTGCGAA GATTATTCTA AAAACTGAGG TAGATGAACA CCTGGCTGTA TGTCCTGAAG CTGAGCAAGA CTGTCCTTTT 004800 004801 AAGCACTATG GCTGTGCTGT AACGGATAAA CGGAGGAACC TGCAGCAACA TGAGCATTCA GCCTTACGGG AGCACATGCG 004880 004881 TTTGGTTTTA GAAAAGAATG TCCAATTAGA AGAACAGGTA AATCTTCAAA GGTTCAAATA AAAAGTGAGG CAACAGAA |
Predicted Small Protein
Name | NONHSAT009288_smProtein_4121:4333 |
Length | 71 |
Molecular weight | 8178.8679 |
Aromaticity | 0.1 |
Instability index | 53.3228571429 |
Isoelectric point | 6.02642822266 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.0195699901582 |
Amino acid sequence | MPEEHSCIYFCTELGLKNLLFGEKFCEKLKTFLLVALHLLLAKILFEHMLCMCNECWVLS HKEVTIMSTL |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEEL LLEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooo oooooooooo |