NONHSAT009560
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009560 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
816 nt |
Genomic location |
chr1+:219642489..219651823 |
Exon number |
2 |
Exons |
219642489..219643208,219651728..219651823 |
Genome context |
|
Sequence |
000001 atccacctaa caaaaaacta cttgtacccc aaagctattg aaataaaaTT TTCTTAAAAA ATCTCAAAAA AGACATTAAC 000080
000081 GATAGCAGAA AGGGACTCTT GAATCACCAA CAGAAGGAAA ACTTACATTT TCAAAGGAGG CTACAAGTAA AACTGATATA 000160 000161 GTCATCTTTT TCCAAAACAT AGTAGAGAAT AAATTGCAAA TAATTAAATT GGGTTTCTAG GCTGAATGAT AACTTTTGAG 000240 000241 AGCTGACATC TGATCACTGA GCTCACCTAT TCAAATAAAC GTAGTATTAG TTGGTCTGTT TTTCTTTCAT TATATTTAAA 000320 000321 GCTAGGAAAA TCTAGATGGA ATAACCAGTC TCTCTCACTG ACAACTTTGT ATTTTTCTGC TGCAAAGGAG CTCAATTTTC 000400 000401 TTTACTCATT TTTTCTGTGT TTAAACAAAC TCTAAATAAG CTTTATATTT TGAAACATTT ATGTACACAC AGCCTTATAC 000480 000481 ACCTAACCCA AAAGAAGATA AAGTTAAATT TTAGTAACCT GAAGTTCTTC ACTGAAGCCA ACATGGAATG CCTCCTTCTT 000560 000561 CTCCCACAGC AATGTCACGA GGAGAATGAC AGCCTCCACA CAATCTGTCC CGAAAGTCTT CTCATCTCTC CACTTCATGA 000640 000641 GCCTTACTCC TGTAAGTACC ATGTTCTTAC AGCTTCACAA GGGAGCTGGC TCATCTGCTG AAGGAAATCC ACACAAGCAT 000720 000721 GGCCTCAGCA GCAGCAGTTC AAAGAGTGCT CCCCTCCAAG TGCTGGGACT GTATGATTTC ACTAGAGTGG AGGAAGAAGC 000800 000801 GGGAAGCCGG TGGTAG |
Predicted Small Protein
Name | NONHSAT009560_smProtein_542:700 |
Length | 53 |
Molecular weight | 5924.8006 |
Aromaticity | 0.0576923076923 |
Instability index | 84.0384615385 |
Isoelectric point | 4.95025634766 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0127943069119 |
Amino acid sequence | MECLLLLPQQCHEENDSLHTICPESLLISPLHEPYSCKYHVLTASQGSWLIC |
Secondary structure | LLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEEEL |
PRMN | - |
PiMo | - |