NONHSAT009594
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009594 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1537 nt |
Genomic location |
chr1-:220439521..220441057 |
Exon number |
1 |
Exons |
220439521..220441057 |
Genome context |
|
Sequence |
000001 CACAAGCCAG TTCAGAATCA GAAGCAGAAG CAATTGCAGG CAACCAGTGT ACCTCATCCT GCCTCCAGGC CACTGAATAA 000080
000081 CACCCAAAAC AGCAAGCAGT CCCCGCTGTC GGCACCTGAA AATAATCCTG AGGAGGAACT GGCATCAAAA CAGAAAAATG 000160 000161 AAGAATCAAA AAGAGGCAAT GGGCTTTGGA AGACCTTGAA ATTGGTCGCC CTCCGGGTAA AGGAAAGTTT GGTAATGTTT 000240 000241 ATTTGGCAAG AGAAAAACAA AGCAAGTTTA TTCTGGCTCT TAGGGTGTTA TTTAAAGCTC AGCTGGAGAA AGCAGGAGTG 000320 000321 GAGCATCAAC TCAGAAGAGA AGTAGAAATA CAGTCCCACC TCCAACATCC TAATATAATC AGACTGTATG GTTATTTCCA 000400 000401 TGATGCCACC AGAGTCTACC TAATTCTGGA ATATACACCA CTTGAAACAG TCAATACAGA ACTTCAGAAA CTTTCAAAGT 000480 000481 TTGATGAGCA GAGAACTGCT ACTTATATCA CAGAATTGGC AAGTGCCCTG TCTTACTGTC ATTCAAAAAC AGTTATTCAT 000560 000561 AGAGACATTA AGCCAGAGAA CTTACTTCTT GGATCAGCTG GAGAGCTTGA AATTGCAAAT TTTGGGTGGT CAGAACATGC 000640 000641 TCCATCTTCC AGGAGGACCA CTCTCTGTGG CACCCTGGAC TACCTGCCCC CCGAAATGAT TGAAGGTCGG ATGCATGATG 000720 000721 AGAAGGTGGA TCTCTGGAGC CTTGGAGTTC TTTGCTGTGA ATTTTTAGTT GGGAAGCCTC CTTTTGAGGC AAATACATAC 000800 000801 CAAGAGACCT ACAAAAGAAT ATCACGGGTT GAGAATTCAC ATTCCCTGAC TTTGTAACAG AGGGAGCCAG GGACCTCATT 000880 000881 TCAAGACTGT TGAAGCATGT TCCCAGCCAG AGGCCAATGC TCAGAGAAGT ACTTGAATAC CCCTGGATCA CAGCAAATTC 000960 000961 ATCAAAACCA TCAAATTGCC AAAACAAAGA ATCAACTAGC AAGTATTCTT AGGAATCGTG CAGGGGGAGA AATCCTTGAG 001040 001041 CCAGGGCTGC TGTATAACCT CTCAGGAACA TGCTACCAAA ATTTATTTTA CCATTGACTG CTGCCCTCAA TCTAGAACAC 001120 001121 TAAAAGAAAT ATTTGTTTTA CTGAGCAGGT GTGCCTTAAC CTCCCTACTC AGAAAGCTCC ACATCAATAA ACATGACACT 001200 001201 CTGAAGTGAA AGTAGCCACG AGAATTGTGC TACTTATACT GGTTCATAAT CTGGAGGCAA GGTTCGACTG CAGCCACCCC 001280 001281 ATCAGTCTGT GCCAGGCATG GTGTCCTCCC AGGAGGCAAA TCCAGAGTCT GGCTATGGGG AAAGTGACCA CTTTGTGCTG 001360 001361 ACTCGATCGG TTAAGGAGCT GTCCAATAAC CTTCCAAGTA CCTGAGTGAG TGTGTAACTT ATTGGGTTGG CCAAGCCTGG 001440 001441 TAAAGCTGTT GGACTGAGTA CGTGATTCTT TTTAAGTAGG AAAATAAAGA TATTTGTACA GAAAAAAAAG TACTTTTATT 001520 001521 TTACTGTGGA CAGCTGC |
Predicted Small Protein
Name | NONHSAT009594_smProtein_896:1096 |
Length | 67 |
Molecular weight | 7463.3685 |
Aromaticity | 0.0909090909091 |
Instability index | 44.1622727273 |
Isoelectric point | 9.13873291016 |
Runs | 13 |
Runs residual | 0.0463618218109 |
Runs probability | 0.0303629421276 |
Amino acid sequence | MFPARGQCSEKYLNTPGSQQIHQNHQIAKTKNQLASILRNRAGGEILEPGLLYNLSGTCY QNLFYH |
Secondary structure | LLLLLLLLLHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLEEELLLLEEELLLLHH HLLEEL |
PRMN | - |
PiMo | - |