NONHSAT009928

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT009928

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3052 nt

Genomic location

chr1+:227751236..227847594

Exon number

3

Exons

227751236..227751425,227770215..227770300,227844819..227847594

Genome context

Sequence
000001 GTTTCCGGGA TCTGGCGGGG CCTTTGTCTT GTGCTCCAGC TGGAGCTTTG GTCCCGTATT CTCGGCTATT TATCCCCAGC 000080
000081 TGCGGGAGGC CCTGGTGACT CTGCTGCTGC AGTGTCTGGT TTCCCTGTGA CCTGCAGGTA CTGGGAGTTA CATAGCTAAG 000160
000161 ATGCCAGGAC ACCCCGAAAG CCGGAAAACG agacgcattc tcactatgtt gcccaggctg gtcttgaact ccttccctca 000240
000241 agtgattctt ctgcctaatc ctcccaaagt tcttagatta ctcatgaatg gattggtgtt cttaccactg cagttagtgt 000320
000321 gttctctgtt agttcatgtg aaagctggtt gttaaaaaca aaaacaaaca aacaaaaaac tgatattcct cttgctttgt 000400
000401 cttttgccat gatacccctt tgccttttat tatgcataaa agcttcctga ggcctcatca gaagttaagc agatgttgat 000480
000481 gtcatgcttg tatagccaac agaactgagg ctaataaacc tcttttctgt attaatttgc cagtgttaag tattcccttc 000560
000561 tagcagcaca aaatggacta acaTCCCATA GGTTATATTT TTATTTTTTT CTTTTGTAAA TACTGGACAA TGATACTCTT 000640
000641 ATATAATCTT CAGTATAACC ATTATAATTG CCCACTATAA AGGAGTATAA TGAAAGGCCA TGTATTTTGA ATCACGAATG 000720
000721 ACTATTTACA AAATGTCATA CTACGTTTTT CTTTGAGCCT GTGACCCCTC TGGCCTGTAA AAACACATAC ATACATTTAG 000800
000801 TTTTGATTAA CATGGAGTTA ATTTTATAAG TCTGTCACTC TAAACATAAG TGTTAGCTTT AAGAGAATTA CAGAGCATGT 000880
000881 AATTGTGTTT GAGTGTAGGT GTGTACTTTT TTGAGAAGAA AACAAAAATA TTGGAACAAA ATATAATTTA AAAAGTATTG 000960
000961 GTAATTTACT AGCAAACTAG GAATCTCAAA GATTCTGAAA GTAAATATTT ATTCTCTGCT TTGTATTGAA TTTACTTCTG 001040
001041 TAAAATCTTA TGGCTGCTGG CTCAGAATCT TCTCATGCAA ATCCTGTTTT TTTCTTGTCT GTTGATCATA CTAAACCTAA 001120
001121 TGTATAGTTT TCTCATTCCA AAGTTCATGA AATTTTCTCT ATATTCCTGA GAAATTCTAA GAATAACTTT CATAAAATGT 001200
001201 ATTGATGTTC ACAAGATAAT TTTAAGATGT AATTCTACAA TATGTGTGTT ACTACatttt atttaattag tatattttat 001280
001281 ttttGTATTT CAATTGGAGA ACCCTATTTT GGCCAATTTT TACTTGGTTT TTGTTTCCAT TTTAATATTT TACATAATTG 001360
001361 AATTTTTTTC ACTTTATTGA GCCATTTTGT TTAGATGTAC ACTGGGAAGG CTTCATAATT CACAAAGTTG TTTTGACATA 001440
001441 TAAATGAGGT GAACAAACAC AGGAAAGTGC TAGGTTTCCT GGGGGTATAA TAGATGCTCT ATAATTAGCA GTAAATATTC 001520
001521 TTGTTTAAGT CACTTTTTGG CTACAAGTAA GAGATTAGAA ATATTCAGCA TAAAGAGATG GCATTAACTC TGCATGTAAA 001600
001601 GAAAACACAT GTATACCCAG GCTGTACAAC TGCCTCTGAA ATTAAGAGGA ATTGTGTTTA TTTCATAGTT ATCTCTGGTA 001680
001681 CTTCACTGTT ATTTTATTTT CACCCCCAAC TATGCGTCAA TCATAGCCCT TTCCCTTCTT TGCTTATTAT GGCTACAGAT 001760
001761 TTCTCACTGT TCTCTGCAGC CCATGTAATT TCATACAGTA TTTTGTAGGT TGTGATAAGG AATTTGAAAT TTTTAATATA 001840
001841 GTGAAAAATT GGATTTAACT GGAGAGTTTG AGGACATTTT TAAGTTAGAA ATGCACCATT TGAATCATTT AATTGGCATA 001920
001921 ATTGGGATGT ACTCTACACA GTTTATAGGA TTAAATTACT GAGTTAGTAA TGTTTGTATG AAAGAAATGT TATTAGATTC 002000
002001 TACCACAAAA TATAGTAAAC ATGAAATCAG TTAGAATAGG TAAAGCATTA ATAATGGTAG GCTATATATC ATAATCACTA 002080
002081 TATAAAGAAA CATCAGAATT TGGAAACCCC TTAAGCAAAA ATATATCTTA GAAATCTTAA GGACACTTAA TGGCAAGCAA 002160
002161 AAAAGTTTAA ATTTAGTTTT TTATAAATTA CATATAGCAC AATTTATGTG TACATGTAGA ATCTTTTAGT TTTTAGTGTT 002240
002241 TATGTAATAT ATTAGACAAT AATAAACatt tacatttatg tttacattta tatttaattt ttcaaattta atttaaattt 002320
002321 CTAAATGCTT CTGTGGATTT AAATTTTGGA ATAATCTTTT CTTCCCCATT GATACTGGAA TCTTGGGAAG TTTCTTACTC 002400
002401 ATATCACAAT ATGTTTTATT TAAATGGATG CAGCTTACAT TGCAGAGTTT ATATAAATAA TCACATAACA AGCCAATTCC 002480
002481 TTAGTCATTT TCTGTATTAA AAAACTCAGA GATCTAGAGA GCTTTTGGAT TGAAATATTT CCTTGGTGAT TTTGGATGCA 002560
002561 AACCTGATTT CTGTGTTCAC ACCATGGCCA GAGATGGGAC TGTTAGCACC ACCTGCTTCT TTAATGTCGT CCATATGATC 002640
002641 AGCATCAGCA CCAGAAACTC CAGGTGTCCC AAACTTAAAG TGAAAGCCAT AGAGTCCTTT GGTGACTCCC ATGTTCTGTG 002720
002721 CTGGTTCTAG AACATGCTGG TAAATATCAG AGTTTCTATG CTTATGGCTG ATAAGTAGAC ATTTTTAAAA ATCATAAAAA 002800
002801 CTGTATTTTC TATATAGTTC AGCTAAGTTT ATGAAAAAGA TGCAGACTCA GTATTTGGAG CATTGCTATC GCTCCATGAT 002880
002881 GTGTTTAAAA ATTAttttta aattgacaaa attttatatc tacatatata tatatcttgt aacacatgat gtttgaaatg 002960
002961 cttaattcta gccaattaaa aatgctttac ctcaatagtt atttttattg tgagaaaggt caacatggtc ttggcactta 003040
003041 aaaaaaaaaa aa
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Predicted Small Protein

Name NONHSAT009928_smProtein_1577:1807
Length 77
Molecular weight 8492.9285
Aromaticity 0.131578947368
Instability index 42.1869736842
Isoelectric point 8.55767822266
Runs 17
Runs residual 0.0822746521476
Runs probability 0.0553477352785
Amino acid sequence MALTLHVKKTHVYPGCTTASEIKRNCVYFIVISGTSLLFYFHPQLCVNHSPFPSLLIMAT
DFSLFSAAHVISYSIL
Secondary structure LEEEEEEELLLLLLLLLLHHHHHLLLEEEEEEELLEEEEEELLLEEELLLLLLHHHEEEL
LLLHHHHHEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHH
HHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooTTTTTTT
TTTTTTTTTTTTiiii