NONHSAT010295
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010295 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1372 nt |
Genomic location |
chr1+:234782035..234796670 |
Exon number |
4 |
Exons |
234782035..234782251,234790972..234791210,234791854..234791979,234795880..234796670 |
Genome context |
|
Sequence |
000001 AAGATGTTAT ACTTCACAGT AAGGGCTAGT TTCTAAACAT GAAAGAACAC ATAGCTTATG TAACATGACA TTTGTTGGAG 000080
000081 AATATGCCCT AGAAAATCAT GATATCACAG ATATATACTA AATATCTGAA GGAGATTACG GAGAAAACAT TTCCAGCGGA 000160 000161 GGAGTTCTTT AATATAGACA GAGCTTGTTT CAGAATTGGT ATCTTCCTGA ATATTTGGCT GCTTGGAAAA AGTTACATTG 000240 000241 GTGCCGGGAT TCAGCCCTTG CCTGGACAGA GGTGGCCGCT AGAGTCATCA GCATGGACAC TGGCACCAGT GACTACATAG 000320 000321 GTCCCAGGAT CGTAGCCAGC CACCTCGGGT GCCTCCGGAG ACCACTTGAG AAGTGCAGAG ACTGTGGGCC AGCCCCTCAT 000400 000401 TCTTGTCTGA GACAGTGATG CCCTCCCCAC TCAGTAATTA TGCACAGCTA GCAGAGCTCT GAAATGAATG GCTTCATTTA 000480 000481 ATCACAAAAG AAGGAATACC AGCAAGACCA CCCAGGCCCC AGCTCCGGTT TTTCCTGAAG AATTTGGCCG CATCTCCCTT 000560 000561 TTTGAAGGCA GAGTTTCATC TTGCTCCAGG GAGAAGCAAC TTCCTGGGCA TGCGTGTTAA GAGACAAAAA ATGATGACGT 000640 000641 TTGATGACCA CTCCACCAGA AAAGGGAAGA AAGCCTGAGG GGCCTGCGTG GACCTCCCTA AACACACTGC GCATGCTCCA 000720 000721 TTCCAAACGG TATGGCGAGC ACTGCGCATG CGGGAAACCC ACCCTGTAAG GGAAGAATCC TGGGAAAGAG GCAAGCCTAT 000800 000801 GAAGTCCCAG GATCAAGGTT AAAGACCCTC TTTTTTACTG TCTTCTTGTG CTCTCTTTTC TCTCTTGGAC CTTCAGGCGC 000880 000881 CTGCTTGGGT CTCTTTCAAG CGAATTTTGC TTTCTTTCCT GTTCTAAAGC CTTTTAACTA AACTTCCACT CCTGCTCTGA 000960 000961 AACTTGCTCT CTTTTTCTGC CTTAACGCCC CTCAGTCGAA TTCTTTCTTC TGAGGAGGCA AGGACTGAAG TTGCTGTGGA 001040 001041 CCCATAGGGA TTCGCCATTG GTAACTCGGG GTAACTCGGC TCTCTTCCAC TGCTGACGTA TGTAGCAAGT CCTGTCTTCG 001120 001121 GGTTGGCAGG CACCACGGCT GACACCACAT GCGCAGAGAG AGGGGAAAGA CCAAGAAGTG ACTCATGACA TCACCCTCGT 001200 001201 CTCTGAAAGA CAAGATGTTG GTCTCCTCAG GTGCCGTGCA GTCTTCAGTG TTGGCTGCAG CCACAGCCCC TGCAATGCAG 001280 001281 ACCAGGATGA GGGAAAGCCG CTGGAAGAGG CCTACAGCAT TTTTTATTAG TAAATCCAGA GGACGTGTTA TATAAAGTGT 001360 001361 AAGACAACCA CC |
Predicted Small Protein
Name | NONHSAT010295_smProtein_98:319 |
Length | 74 |
Molecular weight | 8381.6762 |
Aromaticity | 0.150684931507 |
Instability index | 61.402739726 |
Isoelectric point | 7.87042236328 |
Runs | 9 |
Runs residual | 0.0208572691118 |
Runs probability | 0.0251820447899 |
Amino acid sequence | MISQIYTKYLKEITEKTFPAEEFFNIDRACFRIGIFLNIWLLGKSYIGAGIQPLPGQRWP LESSAWTLAPVTT |
Secondary structure | LHHHHHHHHHHHHHHLLLLHHHHHLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL LLLLLEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo ooooooooooooo |