NONHSAT010727
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010727 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2598 nt |
Genomic location |
chr1+:246939315..246955687 |
Exon number |
6 |
Exons |
246939315..246940404,246943686..246943885,246944781..246944929,246952919..246953000,246953748..246954497,246955359..246955687 |
Genome context |
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Sequence |
000001 AAATTGGATG GAAAGAAATT CTGTGTGCTC CCAGGATTCC AGTTCCTTAC CGGAGGTTGG TGCCGTCTGA GTCTGAAAAG 000080
000081 CTGCCCTCTT GCCGTGTTCA TGCTTTGGTA GAACACCTTC AGAGCCTTGG CAAGCTCTCG GTCAGAGCCG GCTTGCTGTG 000160 000161 TGCACATTTG GCTCATCTCC CCGGCGGATG GCAGTTGCGC AGTCATCCCG CTGATCTTCA GAGTGTTGGA AGGCTTCGGG 000240 000241 GCTGAGGTGG AAAAAGGTAA CATTGATTTA TGTATCTCTT TCTCTGGGCA TCTCTATATT TATTTTGGTG GCATTCTACT 000320 000321 GCATCAGCAT TTATCAGGCA CCAGTTTGGA TCCATCCAAG GGAAAGGGGA AATCTCACAG GGCAGAAGAA ATGTCCGGCA 000400 000401 TTTTTTGTTT ATGAAAGAAG ATACGAATTA ACTCATTTAA AAGTTTGTTT CTTAAAAGAC AAATACACAT CCCAAATGTA 000480 000481 GGAGTCTAGG GATAAGCTAA ACAGCCAAGA CTGGAGCAGT CTCTCACCTT GACCAGAAGC AGTTTTCGCA AGTGATGCTT 000560 000561 TGAGAAGCAC GTTCTCCTCT CTCAGGGCTC TGTTAATGTT CCTGAGCGGT TCCGTCTCCT GCTCTAGCTT GAGCAGCTTC 000640 000641 AGATAAAGTT CTGGTATCTG GTTTGATGCT GCCTACCAGA AAACATGTCA GTTTCGTCTT TTGTTGTATC ATCTGCATAT 000720 000721 CCTTTGAGAC TGGCAATGTT TGCTACCATG GGAAAATCAA ATGGGATGGG AGTGTGTGTA TGGTGAGCAG AGTTTAAGCC 000800 000801 CCTCAGGGTA CACAGGAGTA AATAAAGAAA ACGTTTGTTA AGGGGGAAGG AACGTCAAGC AGCCGTCCTC AGAGATTTTC 000880 000881 TAGCCACCTG GGATGCCCAC TTTAGTGTCC TATGTACACA CCTGGCTTAT ATCCTTCACA GTGGAAATTT TCTTGGTGTC 000960 000961 TACCAGGATG TGGCCTTCAC CTGTGACCAT GAGGCCCAGC TGAGAGCAGC TCAGCTCGGT GCAGCCTTCT GTAATGGGGA 001040 001041 GAGACACAGT CAAAGAAAGA AACATCCCAG TCGCCCAGCT CCAGTGTCAG CTTCATGCAG TAGGCCAGCG ACTGGAGCCA 001120 001121 GATGTGAGCT GAGCCCAAGC GGACGACCTC GACAGGATCC CAGAAAGGGT CGTCATCTCG AGCCACAGGG CCGTGATCTC 001200 001201 CATCTAGAAA GCGCTGGTAA AGTTCCTGCA TTAGGAATTT CCTATTGATG AACTTGGCTT TTGACCATAT CCACACCTGG 001280 001281 AAACACAGAG GGGTCCACAC CCAGTGCACA GCAGATCCAG GACAACAGCC TGCCGCTGTC TTCCTCCTCA CTGGGTGAGG 001360 001361 ACAGGGCCTC TGTCAGCACT GGCTCTGGAG AGGAAACAAA CCTGAAGCCA CAGGAGGAGG GATTCCAGAG GGATTCCAGC 001440 001441 CGCCCTCTCC AGCTGGAAGA AGTCGTAATC GAACCTGCTC AGGTCCTCAC TGCCCCACTC CGAAGGAAAC CCCACGTACA 001520 001521 GGTGAGGTCA GAGGAGTGAA GTGACTTGCC CAAGACCACA CAGTGAGTCA GGAGCAGGCC TGTCCCTCCA GCAGTGGTGC 001600 001601 CATGTTGTCC CCAAGCCATG GTGGCAGAGG AGCTGGTGTG AACGCCCCAT CCTGCCACGT CTGTGATGTG GGCACCTCAC 001680 001681 ATGACTGTCC CCTCCCAGCT CTTGGGGGGG ACCTAGGACA TTCTGTGAGC CTGCAGGAAA GTTTACCAAA TGCTGCAGCT 001760 001761 TTGTCCTGGT GGTGATGGGC ACCCCGTTAA CGGCAACCTT GCATTTGCTA TGTGGAGTGA CCGTCACTTT ACCGTCGGCA 001840 001841 TTTGTGAAGG AAGCGTGTTT ATCTGAAATT CTAAGAAGAT GAGAGTCAAA GACACCCAGC AAACGGCGGT TTCCGTGAGC 001920 001921 AGGTAGGCTG ACCTTTCTCA TGTGCACAGG AGGGAAGGTC TACAGCTGCG GAGGATGGCA GGTGGCATCT CGGGGCCTCC 002000 002001 TGTGTGCTGT GGCCCATGAT GCATGGGGAC AGCAGCGGGC GCAGAAGGAC CCTGCCCTTG GGGAGCACGG GGAGCTGGGA 002080 002081 GACAGCAGGC AAGGGCTTCA TTAACAGAAC GAACACCAGC TGAGGGCCTA GCACTGCGGG GAGCCGGCCA AGGCCACACT 002160 002161 GGAGTCCTCC CGCTCCCAGG CCAGCGGGAT GGGGTGGTGG GAAGATGGCA GCAAGCAAGC TTCAGAAGAG ACGCTCAGGA 002240 002241 GGCGACTCTT AACGAGCCTC ACCTACTCCG GGGTTGGAGC CCAGGAAGCA AACCAGCACT GCACCCTAGA TTTCAGCCAG 002320 002321 AGGACGAAAG CCCTGCCCTC AGCTTTCTCA GACCAGCCCT GGAGTAGGTG GCCCGGGGAG ACCTGGGCAG TGTCCCTGCT 002400 002401 TGTCCTGCAG ACTGTGTGGC TCTGCAGACC TCTAGATGGA GGAGGCACAA TTCTCTAATG CTGGACGAGG ACACTGATCA 002480 002481 TGGAAACTCA CCCCAAACCT TGAATCGTGA TAGCATTTGA GGCAGCCTGA CCGGTGCCAC ATGAACCTGA AAGGAATCAA 002560 002561 GATATAATTT ATTTTGAAAA TAAATCAGAC ACTTTCAG |
Predicted Small Protein
Name | NONHSAT010727_smProtein_1601:1774 |
Length | 58 |
Molecular weight | 5721.3166 |
Aromaticity | 0.0350877192982 |
Instability index | 65.0333333333 |
Isoelectric point | 5.57464599609 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.0252731723321 |
Amino acid sequence | MLSPSHGGRGAGVNAPSCHVCDVGTSHDCPLPALGGDLGHSVSLQESLPNAAALSWW |
Secondary structure | LLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLEELLLLLHHHHHHLLL |
PRMN | - |
PiMo | - |