NONHSAT010936
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010936 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2338 nt |
Genomic location |
chr10-:1657287..1659814 |
Exon number |
2 |
Exons |
1657287..1659603,1659788..1659814 |
Genome context |
|
Sequence |
000001 TCCCAGGATG CAGAGCTCAG CAGGGCAGTG TGGAGTGTGT CTGGACGGGC ACACAAACAT CTAGCAACAG AATGCAGCCC 000080
000081 TCTGAGGCCA GTTCCCAGGA TGCAGAGCTC AGCAGGGCGG TGTGGAATGT GTCTGGACGG GCAAACAAAC ATCTAGCGAC 000160 000161 AGAATGCAGC CCTCTGAGGC CAGTTCCCAG GATGCAGAGC ACAGCAGGGC GGTGTGGAGT GTGTCTGGAC GGGCACACAA 000240 000241 ACATCTAGCA ACAGAATGCA GCCCTCTGAG GCCAGTTCCC AGGATGCAGA GCTCAGCAGG GCAGTGCAGA GTGTGTCTGG 000320 000321 ACGGGCAGGA CGGGCACACA TCTAGCGACA GAATGTAACC CTCTGAGGTC AGTTCCCAGG AGGCAGAGCA CAGCAGGGCG 000400 000401 GTGTGGAGTG TGTCTGGACG GGCACACAAA CATCTAGCGA CAGAATGTAA CCCTCTGAGG TCAGTTCCCA GGATGCAGAG 000480 000481 CACAGCAGGG TGGTGCGGAG TGTGTCTGGA CGGGCACACA AACATCTAGC AACAGAATGC AACCGTCTGA GGCCAGTTCC 000560 000561 CAGGATGCAG AGCACAGCAG GGCGGTGTGG AGTGTGTCTG GAGGGGCACA CAAACATCTA GCAACAGAAT GCAGCCCTCT 000640 000641 GAGGCCAGCT CCCAGGATGC AGAGCTCAGC ATGGCAGTGT GGAGTGTGTC TGGACGGGCA CACAAACATC TAGCAACAGA 000720 000721 ATGCAGCCCT CTGAGGCCAG TTCCCAGGAT GCAGAGCTCA GCAGGGTGGT GCGGAGTGTG TCTGGACGGG CACACAAACA 000800 000801 TCTAGCGACA GAATGCAACC CTCTGAGGCC AGTTCCCAGG ATGCAGAGCA CAGCAGGGTG GTGCAGTGTG TCTGGACAGG 000880 000881 CACACAAACA TCTAGCGACA GAATGCAACC CTCTGAGGCC AGTTCCCAGG ATGCAGAGCT CAGCAGGGTG GTGTGGAGTG 000960 000961 TGTCTGGACG GGCACACAAA CATCTAGCGA CAGAATGCAA CCCTCTGAGG CCAGTTCCCA GGATGCAGAG CTCAGCAGCG 001040 001041 CAGGGTAGAG TGTGTCTGGA GGGGCACACA GACATCTAGC ACTACTTGCT GGTTCTGATC CTCGTTTTTC TTTTTTTTCT 001120 001121 GGATGAAACA TTCAAGTTCC CAACAGAAGA GAAATACAAA GTTCTAGCAG CAGTAGTTTT GAATGATGAT TTCAATCCAG 001200 001201 TTACACTCCC ACTGGGACCC TTTATAGAAA TGCAAGCCAC CATCAATGCC CTTCCTATGT GGTGGCAAGA AAAATGGGAG 001280 001281 AAAAAGTATA ATTAGTCAAC ATAAAACACA GCTGCCATAT TCCTCACTTC TGAAGGAGGG CACAAAGCCT AAATATAGAA 001360 001361 TTCCAGCCTC CCCCTGCCAC CAGCATTGTA AAATGGATGA TCCACTTTGC CATCTCCTCT GCTGGTTTGA CAGGTGGGGT 001440 001441 GATCTGAATC TGCCTTCTAG TAGAATCCAA TTTTCAGTGG CTTTCTCCTT ATTTAGGGGT CACAGTTTCC CATTGACTAA 001520 001521 TGCAATGAAC ATCATAGGCT GGTGAATTCG GCGTGTTTAC AACACAGTGT TGCTGCCCCA CTGGGTAGGA GCACCCACTT 001600 001601 TCCGAAGGGA GGGACTGTGG TATTCAGGAC AACAGCCCCT GCCCTGCCAA GTGGTGTCAA CACTGGAGAG GTGAAAGTGT 001680 001681 CCTGGGAACA GCCTCAGCCT CCTTCTTACA GAAGCATGGC CATCTTCTCC AGTAGAGGAA AACCTCCTTT GCTCACTACA 001760 001761 TCTGCAAATC CAGCATACCC AAGTCCTGGG GGTGGAAGAA ACACATCCTT CCAGTGAGGT TGTCAGTGGG AGAGCCCAAT 001840 001841 TCCCATTCGA GTGTGTGCGT TCTGTGCCTT CTGACTGAGG GAAATGGCAT GCATCGGACT TGGTGTAAGA CACACTCTCC 001920 001921 CGGGTGGACA ATGCCCCACC CAGACAGCTG TGCACCCTGA CACATCCACC ATACCACGCA TCCTGGGCCT CTGGGTGGTG 002000 002001 GGTACCTGGT GATGGCAGTG AGTCCTGGGC CACATCCAGG GCTGTGCTGC CTCCCCAGCA TGGGCTGGAG GGGATGCCCA 002080 002081 GCTTCTCTGG GGAGGGGCAG GCACACTTCA ATCTGGAAGG CTGCTGTGAG CACAGCATGG CAGGGCGGGA AGGCAAGGCC 002160 002161 ATGGCATTGG CTCCAAGGTG GGGCAGGCAG TGGAGAGTGA ACCTGGAGGC AGACAGACCA CTAAGCAGTG CACCTGCTGA 002240 002241 CCATTCTAGA ACTTTCCTTC ATACCCTGTT CTCACTATTG TAATTTTTGT CATTATTTTC TAATAGCAAA AAAATAAAAA 002320 002321 TTTAAAAATT CAGGCCTC |
Predicted Small Protein
Name | NONHSAT010936_smProtein_812:1078 |
Length | 89 |
Molecular weight | 9603.4931 |
Aromaticity | 0.0227272727273 |
Instability index | 57.2159090909 |
Isoelectric point | 6.02435302734 |
Runs | 9 |
Runs residual | 0.0290909090909 |
Runs probability | 0.0429350919547 |
Amino acid sequence | MQPSEASSQDAEHSRVVQCVWTGTQTSSDRMQPSEASSQDAELSRVVWSVSGRAHKHLAT ECNPLRPVPRMQSSAAQGRVCLEGHTDI |
Secondary structure | LLLLLLLLLLLLLLEEEEEEEELLLLLLLLLLLLLLLLLLEEEEEEEEEELLHHHHHHHL LLLLLLLLLLLLLLLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |