NONHSAT011027
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011027 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2081 nt |
Genomic location |
chr10+:3474758..3477922 |
Exon number |
3 |
Exons |
3474758..3476559,3476996..3477216,3477865..3477922 |
Genome context |
|
Sequence |
000001 GCTGTGGAGA GGTTTTTGGC ATGAGTTGTA TAGCTTCTTT TAGCAAATTT CCTAAAAATC AGATGCATTT TACACTTGGC 000080
000081 TGCATAGTAA ACCCTAAAAG GGTTCCTGGA ATGGATTGAA GTCTAAGAAG CCCAAAACAA ATAAGACATT CATCTGCATG 000160 000161 TTCTCAGAGC AACATCCCCA GCTGAACTGG GCTCTGTGGG GACTCAGCAT GGCATCTCCC TACAGGCATT TTCCCCTTTA 000240 000241 ATTTGTCAGG GTTCCCCTAG GGTTAGCTTG CATCATATTC TACCTTGAAG TCCAAAATCA ATTTCTATAA GCAGTACCCA 000320 000321 GATGGGGAAA CTGAGATCAG GTCTCTGTTA CCAGATGGAT GTCATATtct ctctctctct ctctctctct ctctctcaca 000400 000401 cacacacaca cacacacacT TTTAATGAAT GAGAAAATGC ATTCACATCA CATTTTAata ggattgttct caggaatgat 000480 000481 ggaggccata tttatgaaag gattccagca tggttcttgg cacatagtaa accctcaGAT ATACCtgtat atgtgcgtgc 000560 000561 gtgtgtgtgt gtgtgtgtgt gtgtATTTTA AATGCTCATC TTATACCAAG AACAAGTGAC AATAAACATT TCAAGACAAG 000640 000641 CGGCTGTATT TCAAATACTG ACAGACCAGG GAGAATTTTA TGTTAGTCAC TCAGACCTAG CAGCTAGTAG GAGATTGTGT 000720 000721 TCCGGAAGAG CGGTCACGGC TAGAATGGAG TATGTAGGAC AGCAATGCCA AGGTACTGTG TTCAGCGAGT GGCAGAAGCA 000800 000801 GGGAGGAAAC GGGGCTTGTT AGAGTGGATA AGGTCATGGA ACTGCTGGGA AAGGGAGCAG GAAGGGTTGC CAGTGAGATT 000880 000881 TCAAACACTA TCTTCAATCC CTCAAGAATG AGACAGGGGA AGGAATAGAG GAAACATCCC AATTTATGAA AACtttttgt 000960 000961 tttttttatt gtgacagagt cttgctgtat cccccaggct ggtgtgcagt ggcatgatct tggctcactg caacctctgc 001040 001041 ctcctgggtt caagcgattc ccatgcctca gcgtcccgac tagctgtagg cgcctaccac caagcccggc tgatttttgt 001120 001121 attttcagta gagacaggtt tttaccatgt tggccagact cgtcttgaac tcctgacctc aggtgatccg cccgcctcgg 001200 001201 cctcccaaag tgctgggaat acaggcataa gccaccccgc ccggccTTAT TATGAAAACT TTATGAGAAT TGAGGATCCC 001280 001281 AGCAGAAAGT ATTGAGTGTG TCTGGCATAA GTGGGGTTTT GGATTTTGGG TAAAGAGAGG CCTAGTTCCT GCTCTACACT 001360 001361 CCATGCTTCT CTCCTAATCT CACAGCCTCA AAACTTCCTC TCCACAATGT CTCCGCCCTG ATGGCCTGAC GGAACATCAG 001440 001441 GCCCTGGTTT CCTGCTACTC AATATTGACT TGGTGGTATC CACTAGCACC TGAAGTGTAA GAACTCCCCA CTAAACTCAT 001520 001521 CCTCTCCTCT TGCTTTTTCA AATCCCTACT AATGGCAGCT TCCTGTATAA ACACAATGGC ACTTTCAGTT TCTCGTCAAC 001600 001601 AGCTCAACAC CCGTGGCCTT TTGGCTTTGC CATCACTTGT CTCCACATGA AATAATTGCT GAGTCCTGAT GGTTTAACAG 001680 001681 CCGCTGAGTC CTGATGGTTT AACAGCCGCA GCCTCCATCC CATTTGTGTC TTCATCCGGC TCTCAGAGGC TGTGTCTTCC 001760 001761 TTTCTCTTCC TTCCCCAGTC TTACTTATCT ATCAATTCTA GACACCTGGA TTATTCATTG TTCTTTCGAC AGGCACAGTG 001840 001841 GCTTCTCCTT TAGTCACTTG TTCAGCCTCA GGTGCACTTT CCTTTCATCT CTCTTTCCAC ATGTCTGAAT GCCTAACCTC 001920 001921 TCTGCAAATA AATCCCAAAG CCTGTCTCTT CCATTAGCCT CTCTGGATAC CTCCCTCCTG TCAAGAGAAA AGATTGTTTT 002000 002001 CTTCCTTTGA GTGAACAAAA CACcatgcaa atgcttatag cagttttcct catgatagcc aaaaagggga aacaatccaa 002080 002081 a |
Predicted Small Protein
Name | NONHSAT011027_smProtein_1013:1294 |
Length | 94 |
Molecular weight | 10143.281 |
Aromaticity | 0.0967741935484 |
Instability index | 41.9872043011 |
Isoelectric point | 6.95379638672 |
Runs | 15 |
Runs residual | 0.0303663878933 |
Runs probability | 0.0281693458164 |
Amino acid sequence | MILAHCNLCLLGSSDSHASASRLAVGAYHQARLIFVFSVETGFYHVGQTRLELLTSGDPP ASASQSAGNTGISHPARPYYENFMRIEDPSRKY |
Secondary structure | LEELLLLEEELLLLLLHHHHHHHHHHHHHHEEEEEEEEEELLEEEELLEEEEEELLLLLL LLLLLLLLLLLLLLLLLLLHHHHEEELLLLLLL |
PRMN | - |
PiMo | - |