NONHSAT011226

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT011226

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2047 nt

Genomic location

chr10-:6567126..6569172

Exon number

1

Exons

6567126..6569172

Genome context

Sequence
000001 GTTCATGTGT CTTAATTCTT GATTCAGAAA AGCTATCAAC TGTATTCTCC ATATCTCAAA GTTAACGTGT CCAAAATAAA 000080
000081 ATGTCTCATC TTCTCATGCC ATCTAGTTCT TCCCGCAGTG CTCCCATCTT GTGAATGGGG ATGGCCTCCT ACCATGGGTT 000160
000161 GGGGCCCCAA ACCTTGAGGC CGCCCTGCTC CTCCTTTTCC CTCCCCTCAT CTTCAGTGGC TTGGTACATC CCATCAAGAG 000240
000241 ATATCGGAAT CCCTGCACGC TGCCAGGGTC CTTCTGCTGG TGCCCTCCGA CCATCAACTG GAAGAGTGAA GTCGCCCCCA 000320
000321 GTAGTCTCTC TTCTTCTGCA CTTGCTCCTT ACAGTCCTCT CAACACAGGG ACCAGGGTAC CCCCTTTCTA GGTGTAAATA 000400
000401 AGTCTGCTCT GCACTCAAAG CTGAAGACAG CACGTAGACC CCTCGGGCGG TGTCCTACCT GAACTCCAAG TTCTCACCAT 000480
000481 GGCCTGTGGA CAGCCCCATG GGCACACCCA CCTCGTCTGT CTTCTCTACC CCTTGCTCAA CTCCACGCAG CCCATCCGCC 000560
000561 TTCCCAGAAC GTGCTTGGCA GCTCCGACCT CACACCCATG TTTCGGCCGG GAACGTTCAC CTGCCATTGT CTGTGTGACT 000640
000641 CAGTCCTCTC CTCGTGCAGG TCTTTACTCA ACGTCATTTC ACAGAGACCC TTCAGGACCA GCAAAGCCCT CCCTGCCGCC 000720
000721 CCACCCAGCA CTCCCCACCT CCCTCCTCTG CTTAGTTTGT TTCATGGGAG TCACCTGGTG TATTTCATAT TATATTCTTC 000800
000801 TGCTTTCTTG TCTGTCTCGT GCATCTGGAC CTCTGCACAA AGGATGGGTT TTGTCTCTTT GGCTGACTGC AGTGTCCTAA 000880
000881 GACACTTAGT GCCTAGTAGC TCTAGTAACT GTTTGTTGAA TGAATGAATG AGTGAATGGA TGCATAGTCA CTAAATCAGA 000960
000961 AATCGTGGAT ACTGTAATCA TAGAACATTA GGTCATAAAT ACCAAGGATC CTGAGGAAGA AGAAGAAAGA ATATCTATGA 001040
001041 TTTGGACAGC CATTTTTCCA ATTGTGGAAC ATTGTTTAGC ATTTCAAATA ATGAAAATAA ACACATATAG AAGGCTTACT 001120
001121 ATGTGCTGGG CATTGTTCTG TTTTATACAT ATTAACTCGT TTAATCTGTG CAATGCACGT AGGAGTTTAT GGAGTTTCCT 001200
001201 CATACCTTAT CTCATTCAGT TCCCAAAATA ATACCAGCAG ATTGTGGGTG ATTACAACAT TTTCAAGGAT TCTTCCCCAG 001280
001281 GGCAGCTGCT TGTGGGAGAG CTGAGGTCTA GAAAGGAGGA GTTGAGAGCA GGAAAGGAAC CAAGCCTGAC CCCACCCCCA 001360
001361 TGCCAGCATT TTGATTTATG GAACCCTGGG AGAAGAGTTT CTCCAAAATG ATACTTCATG GCCTCCAGCA GATCCCCCTC 001440
001441 AAAGAAACCA ACCTGGGAAT GACCCTCTGT GTGGAGATCA AGGAGGAAAG AGGCAAGTGA GCCTTTCTTT TCTCCTGCTC 001520
001521 GTGGACTTAG AGTAAGAGTG TCTGGGACAT CCAGGTATAT ACTATTTCCA TTTTTCCTTT TGACATCTTC GATGATCAAG 001600
001601 ATACCTGCTA AGGATTTGTT CAGAAATCAG AATTAGTTGT AAGGCAGTTG CCTGAACAAC TGAAAGCGTA ATGACCCCAC 001680
001681 AGAGAGCACT AAGGCAACAG AAAGTACGGC GAGGTGGGAT TATTAGGTTG GTGCAAAAGT AATTGTGGTT TTTGCCAATA 001760
001761 CTTTTAATGG CAAAGTTTTT TTAAAAAGTA TTTTTAGTAG AGGCAGGGTT TAGCCATGTT GATCAGGCTG GTCTTGAACT 001840
001841 CCTGACCTCA GGTGATCCGC CTGTCTTGGC CTCCCAAAAT TCTGGGATTA CAGGCATGAG CCACCATGCC CAGCCTTTTT 001920
001921 TTAAATTTCC ATTACTTTTA ATGGCAAAAA CTGCAAATTA CTTTCACACC AAATTAATAG GATATTTGAT GAGTTTTAAT 002000
002001 ATAATTATCG TTTTTACCAC AATTGACCTT CCCCTACTCT TACCCTC
[back to top]

Predicted Small Protein

Name NONHSAT011226_smProtein_134:400
Length 89
Molecular weight 9230.7021
Aromaticity 0.0568181818182
Instability index 52.0806818182
Isoelectric point 10.205871582
Runs 9
Runs residual 0.0290909090909
Runs probability 0.0213056193449
Amino acid sequence MGMASYHGLGPQTLRPPCSSFSLPSSSVAWYIPSRDIGIPARCQGPSAGALRPSTGRVKS
PPVVSLLLHLLLTVLSTQGPGYPLSRCK
Secondary structure LLLEELLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEL
LHHHHHHHHHHHHHHHHLLLLLLLLLLL
PRMN -
PiMo -