NONHSAT011226
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011226 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2047 nt |
Genomic location |
chr10-:6567126..6569172 |
Exon number |
1 |
Exons |
6567126..6569172 |
Genome context |
|
Sequence |
000001 GTTCATGTGT CTTAATTCTT GATTCAGAAA AGCTATCAAC TGTATTCTCC ATATCTCAAA GTTAACGTGT CCAAAATAAA 000080
000081 ATGTCTCATC TTCTCATGCC ATCTAGTTCT TCCCGCAGTG CTCCCATCTT GTGAATGGGG ATGGCCTCCT ACCATGGGTT 000160 000161 GGGGCCCCAA ACCTTGAGGC CGCCCTGCTC CTCCTTTTCC CTCCCCTCAT CTTCAGTGGC TTGGTACATC CCATCAAGAG 000240 000241 ATATCGGAAT CCCTGCACGC TGCCAGGGTC CTTCTGCTGG TGCCCTCCGA CCATCAACTG GAAGAGTGAA GTCGCCCCCA 000320 000321 GTAGTCTCTC TTCTTCTGCA CTTGCTCCTT ACAGTCCTCT CAACACAGGG ACCAGGGTAC CCCCTTTCTA GGTGTAAATA 000400 000401 AGTCTGCTCT GCACTCAAAG CTGAAGACAG CACGTAGACC CCTCGGGCGG TGTCCTACCT GAACTCCAAG TTCTCACCAT 000480 000481 GGCCTGTGGA CAGCCCCATG GGCACACCCA CCTCGTCTGT CTTCTCTACC CCTTGCTCAA CTCCACGCAG CCCATCCGCC 000560 000561 TTCCCAGAAC GTGCTTGGCA GCTCCGACCT CACACCCATG TTTCGGCCGG GAACGTTCAC CTGCCATTGT CTGTGTGACT 000640 000641 CAGTCCTCTC CTCGTGCAGG TCTTTACTCA ACGTCATTTC ACAGAGACCC TTCAGGACCA GCAAAGCCCT CCCTGCCGCC 000720 000721 CCACCCAGCA CTCCCCACCT CCCTCCTCTG CTTAGTTTGT TTCATGGGAG TCACCTGGTG TATTTCATAT TATATTCTTC 000800 000801 TGCTTTCTTG TCTGTCTCGT GCATCTGGAC CTCTGCACAA AGGATGGGTT TTGTCTCTTT GGCTGACTGC AGTGTCCTAA 000880 000881 GACACTTAGT GCCTAGTAGC TCTAGTAACT GTTTGTTGAA TGAATGAATG AGTGAATGGA TGCATAGTCA CTAAATCAGA 000960 000961 AATCGTGGAT ACTGTAATCA TAGAACATTA GGTCATAAAT ACCAAGGATC CTGAGGAAGA AGAAGAAAGA ATATCTATGA 001040 001041 TTTGGACAGC CATTTTTCCA ATTGTGGAAC ATTGTTTAGC ATTTCAAATA ATGAAAATAA ACACATATAG AAGGCTTACT 001120 001121 ATGTGCTGGG CATTGTTCTG TTTTATACAT ATTAACTCGT TTAATCTGTG CAATGCACGT AGGAGTTTAT GGAGTTTCCT 001200 001201 CATACCTTAT CTCATTCAGT TCCCAAAATA ATACCAGCAG ATTGTGGGTG ATTACAACAT TTTCAAGGAT TCTTCCCCAG 001280 001281 GGCAGCTGCT TGTGGGAGAG CTGAGGTCTA GAAAGGAGGA GTTGAGAGCA GGAAAGGAAC CAAGCCTGAC CCCACCCCCA 001360 001361 TGCCAGCATT TTGATTTATG GAACCCTGGG AGAAGAGTTT CTCCAAAATG ATACTTCATG GCCTCCAGCA GATCCCCCTC 001440 001441 AAAGAAACCA ACCTGGGAAT GACCCTCTGT GTGGAGATCA AGGAGGAAAG AGGCAAGTGA GCCTTTCTTT TCTCCTGCTC 001520 001521 GTGGACTTAG AGTAAGAGTG TCTGGGACAT CCAGGTATAT ACTATTTCCA TTTTTCCTTT TGACATCTTC GATGATCAAG 001600 001601 ATACCTGCTA AGGATTTGTT CAGAAATCAG AATTAGTTGT AAGGCAGTTG CCTGAACAAC TGAAAGCGTA ATGACCCCAC 001680 001681 AGAGAGCACT AAGGCAACAG AAAGTACGGC GAGGTGGGAT TATTAGGTTG GTGCAAAAGT AATTGTGGTT TTTGCCAATA 001760 001761 CTTTTAATGG CAAAGTTTTT TTAAAAAGTA TTTTTAGTAG AGGCAGGGTT TAGCCATGTT GATCAGGCTG GTCTTGAACT 001840 001841 CCTGACCTCA GGTGATCCGC CTGTCTTGGC CTCCCAAAAT TCTGGGATTA CAGGCATGAG CCACCATGCC CAGCCTTTTT 001920 001921 TTAAATTTCC ATTACTTTTA ATGGCAAAAA CTGCAAATTA CTTTCACACC AAATTAATAG GATATTTGAT GAGTTTTAAT 002000 002001 ATAATTATCG TTTTTACCAC AATTGACCTT CCCCTACTCT TACCCTC |
Predicted Small Protein
Name | NONHSAT011226_smProtein_134:400 |
Length | 89 |
Molecular weight | 9230.7021 |
Aromaticity | 0.0568181818182 |
Instability index | 52.0806818182 |
Isoelectric point | 10.205871582 |
Runs | 9 |
Runs residual | 0.0290909090909 |
Runs probability | 0.0213056193449 |
Amino acid sequence | MGMASYHGLGPQTLRPPCSSFSLPSSSVAWYIPSRDIGIPARCQGPSAGALRPSTGRVKS PPVVSLLLHLLLTVLSTQGPGYPLSRCK |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEL LHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |