NONHSAT011336
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011336 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1794 nt |
Genomic location |
chr10+:9012087..9016316 |
Exon number |
2 |
Exons |
9012087..9012235,9014672..9016316 |
Genome context |
|
Sequence |
000001 ttcttttcca gaggctagat atataggagg ttgtggctgc tccagcagct tggattcaga gtgagaaggc ataaaggaga 000080
000081 atccccagct gacttgtgCA GTGGTTAatt gaaattattc aggcaagaga tgatggtgtc ttggaccagC AACAATATAC 000160 000161 AAAGTTAGTG TTACCAGTAT TTTGTTCTTA TTCTTGAATT ACAGTTAGAA TTGGGCAACT GAGAAATCTG AGACATTCAG 000240 000241 AAATAAAGAC AAGAATAATA ATATTGGTTT TCTTAATCAT CTATCCTTAT CCCTTCTTCC CATTTCTGCC CAAAGATTCA 000320 000321 AGACCCTTCT ATTAAAGCAA TACATTCTTA TATATTCTGA TGTTGTCTTT TCTACTTCAG GGGATGAGGA AGGCTACAAA 000400 000401 ATGTGTCTAC CTGTATTCTG TGAGGAGAAC GTGTTCCCTG GTTTTAGATA CTGTGAAGAT GGATCAGGAG AGAGTTTATC 000480 000481 TAGACTGTTG GGGAAAGGTG TTGCGATTCC TTCAGCTACA CAGGATTGAA AGGAGACATT TCTGAAGGGG AAAAAGGAAA 000560 000561 TGAAAGAAAA GATGTTTCAG ATTGAGGATA TGCTGTGTGG TGAACTTGTT CTTCACTCTG TAGGGTTCAC AAATGACTCT 000640 000641 TCACTGCCCT CTTGGATGAA ATAAACTGGT TCCCATAGAA ATGGACCGTC TCTGATTTCA CAGTCTAGAG CACACAAATA 000720 000721 ACTCAACTTT CTGGAAGCAA GGGTGATGGC TCGTGAGAGC TCAAGGACAA GGAGGAGTCT GTAGAAGCAC ACCTGGACTC 000800 000801 GGGGAAATCA TTGACCTCTC ATCCTGAATT AAGTAGCGCT TGAAAAGACT CTCTTTGAAT CAGAAAAATA ATGCGAGCTC 000880 000881 CTATCAAACT ACCTTACACA GCCAACTGAG TGATCATAGG CTTGGGTGGA AAAAATGTAA TTCGTAGAAC CTTTTAAGAG 000960 000961 CTAAGATTCC TTAATCAACA TGGATACCGT CTTGTTGAAT GACACCGAAC TGTGCTGCGC AGGATTCGGT Tgcatggtgg 001040 001041 ctggagctgc ctctctggga cccaaatctc agacctgctg caaagtgact atatgatctg caacttgcta acccttctag 001120 001121 gcttttgttt tattatttac ataatgaagt gaggggaata tgttccttgt aaatttgtta agaggattaa attagttcat 001200 001201 gtcaaatgat ttagaacact gtctgccaca tattaaggac tcaacaaata ctacctatta ttAACAATGT GCCCTAAATC 001280 001281 TGTAAATCAC TCAATAATAC ATGGCATTAG GCTAAATATG GAAGGTAGAA GGAAATAAAT TGTCCAGAAG CTAAAAATAT 001360 001361 GAAAGACTCT TCATATATTT AAAATAtttt ctttaattct tttgtttttt tcttttttga gacagagtct cgctccgtca 001440 001441 cccaggctgg agtgcagtgg catgttctcg gctcgctgca gcctctgctt cctggattca agtgattctc cttcctcagc 001520 001521 ctcccaagta gctggaatta caggcatgtg ccaacatgcc gagctaattt ttttattttt tgtagagatg gggtttcacc 001600 001601 atgttgccca ggctggtttc aaactcctga cctcaagtga gccacccacc ttggccttcc aaagtgctga gattacaggc 001680 001681 ttgagtcact gtgcccagcc TGAAATATCT TCTTCACATC TTTTCATATG CATATTTGTT TTTACAAGTA CATAAATATA 001760 001761 CATTTTTGAT ATAACTTGGA ATCTTGCATT TTCT |
Predicted Small Protein
Name | NONHSAT011336_smProtein_359:544 |
Length | 62 |
Molecular weight | 7451.8578 |
Aromaticity | 0.114754098361 |
Instability index | 51.1426229508 |
Isoelectric point | 9.93634033203 |
Runs | 10 |
Runs residual | 0.0111173921236 |
Runs probability | 0.0378201731143 |
Amino acid sequence | MLSFLLQGMRKATKCVYLYSVRRTCSLVLDTVKMDQERVYLDCWGKVLRFLQLHRIERRH F |
Secondary structure | LHHHHHHHHHHHLLEEEEEEELLEEEEEEEEEELLLEEEEHHHHHHHHHHHHHHHHHHHL L |
PRMN | - |
PiMo | - |