NONHSAT011466
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011466 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1572 nt |
Genomic location |
chr10+:12875973..12877544 |
Exon number |
1 |
Exons |
12875973..12877544 |
Genome context |
|
Sequence |
000001 TGAGGGGCAC CTGGTCCTCG GTTGGGGCTG CAGGTGTGCC TGACATTTGC AAAAGATATT CCAGTCTTTC GATGTTCAGA 000080
000081 ATTGAAAATG TGGAGATAGA AAAGCTCAAA CAGACTCCTA AAAGGAGGGT TTCTTTCCTG AAGACTCCAA GAAAATGAGT 000160 000161 GTGCAGATGA GTTAGCTTGA CAACCTCAAC TCTGGGGAGC AGGCAGGCGG TCTGAGGAAG ATAAGGGCCC ACGCCCCACT 000240 000241 CACCTGGCAC CTGTTCGGTG GTCCCGGGGC ATCATGGTCT GCAGCTCTGG GCCCCCAGCC CCACTGTGAA GTCAGTCCTG 000320 000321 CATGCTGGCC GAGGCCCGGC CACCTCCCGA TGCCTCCAGA GTCAGTGGGG AGGAGTCAGC CCTTCCCAGA CTTCCCCGCC 000400 000401 ACCTCCAGCA GGAGCAGCTC AGTTTGTGGC TCTGGGAGCT CCGCTTTTGC AAACCCAAAA AGGCTGTGCA TTTGGAAGCC 000480 000481 AAACGCTCAG CATGCGGCTG CCGAGTCTGG TTTTGTGGAC AAAGCAAACT GTGGAATGGC TTCTCGGTGT CTGTATAAAG 000560 000561 GGACAAACGG TTGCATTCAC CCTTTGTACT ATAACACCGC TTCTGCATTC GCCATATCCG TTTTTTAACC TTTTTGTCTC 000640 000641 CGGGGAACTT CTCATTCGAT TATTATGTCT TCTGATGATT TGCCATGTTA TTTTAAAGGT GATTTTATTT TCTTATGGAC 000720 000721 AGGAAAAAAG AAAATGAGGA GGAGTTGGTT TTACTCTTAG AGATAAGACT TCAGCAGGGG CTCAGAAACC CCAAACTCTA 000800 000801 GTTAAATTGC TTCTCGGAGG AAAATCTTAA TCTAGACAGA TTCAGATTCC CAGGCTCTCC TGGAAGCCCT GCACTTCAGG 000880 000881 GCACAGGGGC CCTGGGACGT GGTTGGCAGC CAGGCTGCGA GAGAGCTAAA AAGGAACAAG AACATCAGCT CGGATGTTTG 000960 000961 TCTCTCAGCC CTGACACCTG CCACTCTCCT TCCCGGGGCA CTTGGCCCTA TCAGAGGGAC ATGAAATGCT GTCCGAATGG 001040 001041 TGGCAGAAAT GCAGCGACAT TGCATGCAGC AGAGTCTTTG CTTCGAAAGA TGGGGCGCCA TGTTTCAGAG AACATTTATC 001120 001121 TTAGTCCCAC GTTCAGGTGA GAAGACCTCA AAGGTACCCT CTGTCCAGAA TAAACATTGG AACAATCTCT CAATTGGCTT 001200 001201 TTGTCACTAC ACATAATGTA ATCTCCCTTC TTTCAGCTCC CCCAACAGTG AGCATGCTTC CCAAAAAATT ACAACATCAA 001280 001281 AACCAGGAAT GTCCCCGCAT CTACTATTAC CAGGCTTGCA ATTGGTTCAA TTTTCCCATA AAAACATGTT TGTCCAAAAG 001360 001361 AAGGGAAACT GTGAATTTAT TCCATGCATG TAATAAACTC TGCAAGAAGT TTAACCCACA TAGGTTTGCG GCACTGCAAA 001440 001441 ATTGTTCATG GGTCTATGTA GCAAATGATT CTCTGCCTTG ACAATCATGT ATACATATCA AGATTTCTAT CATAATGATA 001520 001521 ATGAGATTGA TGACTTCCTG TTTTCCTCCA ATAAAGACAA TTAATCACCT TC |
Predicted Small Protein
Name | NONHSAT011466_smProtein_491:736 |
Length | 82 |
Molecular weight | 9336.3618 |
Aromaticity | 0.111111111111 |
Instability index | 42.0950617284 |
Isoelectric point | 9.33941650391 |
Runs | 12 |
Runs residual | 0.00596844084703 |
Runs probability | 0.0378245892952 |
Amino acid sequence | MRLPSLVLWTKQTVEWLLGVCIKGQTVAFTLCTITPLLHSPYPFFNLFVSGELLIRLLCL LMICHVILKVILFSYGQEKRK |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHLLLEEEEEEEEELLLLLLLLLLEEEEELHHHHHHHHHH HHHHHHHHHHHEELLLLEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHH HHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTT TTTTTTTTTTiiiiiiiiiii |