NONHSAT011539
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011539 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1093 nt |
Genomic location |
chr10+:14116287..14129880 |
Exon number |
3 |
Exons |
14116287..14116825,14125297..14125452,14129514..14129880 |
Genome context |
|
Sequence |
000001 GCACGACCCA GGTTCCATGC TACAGGCCTC TACTTGTCCA GACCTGAGGG TCAGATTCAG ATGGTGCAAA TGTTTAAGAC 000080
000081 CTGGGTCTTC AACGAGATGA ATTATCAGCT ATTTCATAGC TGCAGTGTTG GATATGCCGA GACGATAAAA GCAACAGCAA 000160 000161 TCAGAATCAA CAGTTGAAAC GACATGGCAG ACGCTGTGAA TGCTATGAAC TGCTGTGCTG AGCAGCAGGA TTCCTGTGTC 000240 000241 CTGGCGCAAT GCCCATGGGG ATTCATGCTT TCAGAGGGTC ACGCCTTAGG AACACGTAGA AGGGCAAGCA TTTCATCTGG 000320 000321 CAGGGCACTG ATTTAATCTG CACGCATGTT TGGCTGTAAA ACTAGCTCCT CCCCCTTACC ATTTTTGAGT CGCTGCCGGA 000400 000401 CTCAAATTCC ACAGATTCTG GAAGGTGTCC AGGAACTCGT TGATTTGTCA AACTTATGGC TACACACAGC TGGAATGGAG 000480 000481 ACGGACTCCA CTGAGGAGAC TCATACAGGA CAGGAGGGAA TTTTAAGAGG ATAACCCTGA GATTGAAAAC ATCAAACCAA 000560 000561 ACCTGAAGCA CTGAGAGGCT GGGTAACCAG CTCTGGTCAC TGAGTTGGTG AGGGATGGAT TCAGAAGAGG TCTCCAATTG 000640 000641 TGACACCGCA GAGGACCTGC TCTTGGCCAC TACACTCTAC CAGCTCTGCA AGAAGCGCTT CCACACTTTT CATCTCAGAC 000720 000721 CCACAGAGCC AGTGTGTGCG GCTGAGGTGC TCAGACTGGC AGGTGAAATG ACTTCATTAG TGCCCTGGCT CCTGGTGGGA 000800 000801 TGAGAGTGGA AACCCAGCCT TCTGAGTTGA AGAACTGGAA CAAACATCAG CCCTGACACA TTGATGTCAG TTTACCTTTG 000880 000881 TGAGAAACAG GAACGAAATG TGAACATCTA TTTCAGGTGA TGTCATAAAG CCCGACTCAG AAGATGGCTA TGATTTCAAC 000960 000961 AGCCTGTCGG CAGCACGGAT TTCAGAGTAA CTTACAATCA GTAATTAATC TAAACAACAG TGCCGTGTGC ACCCCATTAT 001040 001041 TAAAACAGAA GGGGAAACAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT011539_smProtein_614:802 |
Length | 63 |
Molecular weight | 6964.0066 |
Aromaticity | 0.0645161290323 |
Instability index | 50.8870967742 |
Isoelectric point | 4.85528564453 |
Runs | 8 |
Runs residual | 0.0246082949309 |
Runs probability | 0.0166048401343 |
Amino acid sequence | MDSEEVSNCDTAEDLLLATTLYQLCKKRFHTFHLRPTEPVCAAEVLRLAGEMTSLVPWLL VG |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHHHHHHHEEELLLLLLHHHHHHHHHHHHHHHHLLLHHH LL |
PRMN | - |
PiMo | - |