NONHSAT011817
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011817 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2823 nt |
Genomic location |
chr10-:26213307..26217199 |
Exon number |
2 |
Exons |
26213307..26215945,26217038..26217199 |
Genome context |
|
Sequence |
000001 GTTGCAGTGA GCCAAGATTG TGCCATTGCA CTCCAGCCTG GGTGACAGAG CGAGACTTCG TCTCAGAAAA AAAAAAAAAA 000080
000081 AAGTAAGGTG GATATGTGCA GTGGCTCAGG CCAGCCAGCC TGCAGGACCA CCTTTGGGAG GCCAGAGCAG GAAGATCCCT 000160 000161 TGAGGCTGGT CCCTAACTCC TGACCTCAAG TGATCCGCCC GCCTCAGCCT CTCAAGGTGC TGGGATTACA GACATGAGCC 000240 000241 ACCACACCCG GCAAATGTAC TGTATTTTAG TTGTTGATAA ATGTGAAAAT AAATAGAACA GGGAAAGGGG ATAAATAGTG 000320 000321 GGTGAAGCGG TGGAGGCTGC AATTTTCAGC AGGACAGGGA GGGCAGGGTC CACGGCAAAA GTGACAGTTG GGCCCTAGAG 000400 000401 GAATTAGAAT GTGAGGTGAG GCTGGGGGAC GGAACCTGTG GAGCACAGAG GCTACTTTGA AACCATGGAG GTGCAGCGTG 000480 000481 TCGTGGAGGA GGAGTGTATC CTCTGAAGCA CGCCGATCTC CAGAGATTCC TTCCTTACTC CCTCTTTGCT CCAGCCAGTG 000560 000561 GAAGTATGGC TGGTGTGAGA GTTTACCTTC TGACCAGAAC TGTCTCAAGA ATTTAGGAAT TCTTGTTGCA AGAATGTTGC 000640 000641 AAGTGCTTGT AATAAGTAGA AGAGGAATAG AAGGAAGGAA TTAAGAGCTG GAAGCTCCCT GGTGGGGATT CTGAGCTTGT 000720 000721 ATAACACAGT TAACATTGTT CCCCTTGAGG ATATTCTTCA TTTATCAGCA TCATGCAGAA TGTCACCATT CAGGAGTTGA 000800 000801 ATTGTGAATT CAATTAAGTA GTGATTTGGG TGTTCCTAGG TAGATATACT CACAATATGG TAGAGTTGAA AAAATGATGG 000880 000881 AGATAAAAAC AATTTTGGAG GGAAGTGATC TGAAAATACA GAGCAAAGTT CTTGTTTTCC ATTTAGTTAC CAGGTATTTT 000960 000961 GTAAACCTTA TGCATGACCT TTGTATTTAC AGAACAAATG AAGCATCCAT TAACTTCGAA TGATCAGATG CTAGGGTGTG 001040 001041 AGGAATTTTC AGGCCAAAAT GCACTGGGTT ATTGTCTCCT ATTGACAGTG TGATATTACA GATAACCTCT AGGAGATCCT 001120 001121 GAACATATTC AGGCTAAACC AGGCAAACAA ACATTCAGGA TGTTACCAGT GTGGAAAACC CCTAGGAGGT AAGTATGGCA 001200 001201 GGGAATCAGT CTGAGAAAGA GGGTAAATCG AATGAAGCTA TTTTGGTTAT AAAAGTGCTG CGAATGTATG AGAGTACTTC 001280 001281 AAAACTACTC TCTATGCTAC AAAAGCCAAT AAGTTTAGTT ATGCAGTTCC TTTTGTGTCA TTACATTTCA ATAGAGTTTA 001360 001361 TTTAGTTTTG TTTCTGTTTC ACCTATGAAA TGTGTATTAG TCAGGATTCT CCAGAGAAAC AGAACCAATA GAATATATGT 001440 001441 AGATATATAA AAAGGGATTT GTTATAAGGA ATTAGATTGT GCAATTTTGG AGGCTGAAAA GTCCCACCAT CTGCCGTGGA 001520 001521 AAACTGGTGG TATAGTTTCA GTCTAAGCCC AAAGGCCTGA GAACCAGGAG AACCCGTGGT GTAAGTCCTG ACTTCTGAGA 001600 001601 CCCAAGAACC AGGAGCTATG ATGTCCAATG TCCCAGGGCA GGAGAACATG CATGTCCCAG ATCAACATGA GAGAGATAAT 001680 001681 TCACCTTTCC TCTTTGTTCT CTGTAGGCCT TCAATAGATT GGCTAGTGCC CACCTACATT GCTGAGGGCA GTCTCTTTAT 001760 001761 TCAGTCTACT GATTCGAATG TTAATTTCTT CCGCAGACAT TCTCACAAAC ACACCCAGGA ATAATGTTTT ACCAGCTACC 001840 001841 TGGCTATCTG TTTAGCCCAG TCAAATTGAC ACATGAAACT AACCATCACA AAACTCAACT CTTATTTTAA GATAGCAGCT 001920 001921 TTAAAAAAAT TTACTATACA CATTTAATTA AATTTATTTT CAGTTTACCT CTCAGTTGTA CTACTTACTA GCTGTGTTAC 002000 002001 AATGAGTACA ACATTTAGGG TTTCTGCACC TTGATTTAGT TCTCTAGAAA ATGGTGAGTA CTACTATTGT CTACATCACA 002080 002081 GAATTATTTT GAGGATTAAA TAAAATTAAA ATTATAAGGG CTGAGGACAT TACATGGCAT ATAATACATA ATTATTACAT 002160 002161 ATTAGCTATA ATTATTACTG TTGTGTCATC ATTATTATAA TTACCATCAT TTTCTCACAG AAGCATTTCA GGGCTGTTAT 002240 002241 TACAAAACTC TTTCCCTTGT GTTTCCAATA TGCCAACTAT TTCAATCAAG AAAATTAATA GCCTATGGAA AGACAGTGGC 002320 002321 CTTTGTCATC ACTACGATTG ATTCTATTAA ATGTATTAAA AGTAATGGCA AAAACCCCAA TTACTTTTGC ACCAGCATAA 002400 002401 AATCACTAGG TGCATGAATT TTGCATAATT CTTTTAATTT CTCAGAACCT TGATGTTTCT CATTTGTTCA ACCAGGTAGA 002480 002481 TATTATTAAT CCCTTCAAAG AGATGTGAAG AACAAAGTTC AGAAATGTTA AGGACGGTAA ACGATATCAT ATTTAAGGGC 002560 002561 TTGGCACTTC GTTGACTCGA TAAATAGTAG CTACTACTTT GAGCTATTAT TCCCTTTCAT GAAAATCCTC CTACTAAAAC 002640 002641 TATGTGCTTC TTCCAACAGA GACAGCCAAA ATTAAGACTG ATGGAGAAAT TTCCCCCAGC AATACCACTT AAAAATATGT 002720 002721 ATTTTTTACT TTAATTGCCT GGTATTAAGT TTTCTGCAGG AATACAAATA AAATTGCTTG TATGGCTTTG AGAAACTACA 002800 002801 GTTAAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT011817_smProtein_1823:1909 |
Length | 29 |
Molecular weight | 3390.9063 |
Aromaticity | 0.178571428571 |
Instability index | 44.0396428571 |
Isoelectric point | 8.24859619141 |
Runs | 5 |
Runs residual | 0.0246478873239 |
Runs probability | 0.000830242006712 |
Amino acid sequence | MFYQLPGYLFSPVKLTHETNHHKTQLLF |
Secondary structure | LEELLLLLLLLLLLLLLLLLLLHHHLLL |
PRMN | - |
PiMo | - |