NONHSAT011834

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT011834

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1174 nt

Genomic location

chr10+:26870673..26937946

Exon number

3

Exons

26870673..26871754,26937187..26937211,26937880..26937946

Genome context

Sequence
000001 CAGAAATCTC TCTTATTTCT AGTTTCTTAA TGTTTCAGAG ATTACGGGGG GAAGAGGGTT CTATGAATCC CAGACACTGC 000080
000081 GCGAGGCAGA TTTGGTTTCA GTAATTTTAG CATCATTCAT TGTAAGTTGA TGATCCCTAG GAACTTCTTC ACAGTGAGAA 000160
000161 ACCTGAAAGG TCCTAGCAGC CAGCAATGAA TGAAAGGTGG GGTGGGGCCG CTGGCAGTGA GGTTCCTTGT GAGCCATGTG 000240
000241 CCTGTGCTCT CAAGTTCCAA GTTTGTGGGG ATGCATGCAG GAGATTCTGG ACCTGATTGT TTCCTCTGAA CCAGGATGCG 000320
000321 TTCTGGTTGG TAGGACAACT GGCCTTCACT TGGTGGCCTT CAGTGGGTGC CCTCATTAGT TGCCTTCAAT TAGTGCCCTC 000400
000401 AGTTGGTAAT CTAAGTTGTT TCTCTTCAGT TGGTGGTCCT CAGTTGGTGG TCTTCAGTTG TTGGGCAGTG GTGGAAGGAA 000480
000481 GATGAATCCG TTTGTGCTCT CTCCTCCCCC AGTCACAACT CTCAGGCTTG TTGCATCTAG GCCCTTTTAA AATAAACCAG 000560
000561 AGATGTTGGC AGGTTTTATT AGCAGACAAG TCAGCTCAGG GTATGGGGGT GACGCGAGGT GCAGGCCGCT ATTGGAGTGC 000640
000641 CACCCCATGG CCCAGGGCTG CTCGTGCCAG CAATGCTTTT GCCAGGAAGA GGCGAAAGGT GTTTAGCTCT GTAAACTTGG 000720
000721 GGGTGAGCGA AGGCCCATGC TGCCCGAGAA GACCCCGTGG GGTCCACACG GAACGGTCGC ATATGAACCA AAGGCAGCCC 000800
000801 CAATCAGGGC TGGCGCAAGG GTTCTGCAGA GCTAGCCTGT GGCTCTGATG TCTACGACTG TGAAGTCAGC AAAGACGTAG 000880
000881 GCCACGATAT ACAGGAGCAG AGGAGCCCAG AACACCCTGT CCCCCAATGC CAGCCACAAG CAGGGCTATC TCAGGATGTG 000960
000961 GTGGGTGAAG CCGTCCTGCA GATCTGAGAA TCCTGAGGTG GAGGTGGCAC TAGCACCAAC TCCACTGCTT TGGAGCCTCC 001040
001041 CCAGTCCAAT TTGGGAGCCA GCGAGGGACC TGACAGCAGC ACATTGGACA CCAGAAGACA CCCAAAGgct ggaatgctac 001120
001121 gtcgcgatgt cagctcgctg caacccttgc ttcctgagtt catgtgatcc tcct
[back to top]

Predicted Small Protein

Name NONHSAT011834_smProtein_602:847
Length 82
Molecular weight 9054.2684
Aromaticity 0.0864197530864
Instability index 48.9703703704
Isoelectric point 11.9381713867
Runs 9
Runs residual 0.03106859619
Runs probability 0.0234351999058
Amino acid sequence MGVTRGAGRYWSATPWPRAARASNAFARKRRKVFSSVNLGVSEGPCCPRRPRGVHTERSH
MNQRQPQSGLAQGFCRASLWL
Secondary structure LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLEEEEELLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLHHHLHHHHHHLLL
PRMN -
PiMo -