NONHSAT013273
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013273 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1818 nt |
Genomic location |
chr10-:49717904..49719721 |
Exon number |
1 |
Exons |
49717904..49719721 |
Genome context |
|
Sequence |
000001 AGTCCTCTTC TGGGGACTTA CGGGCCACTT TGTTATGATG AGTCCTGGGC CCTATGGAGC CATTGTTGAG GATTTCCAGC 000080
000081 AGCACCCAGT CTGCATCAAC AACTTCTGGA AGCAGAGAGT CCCTGAACCT TGGAGCAAGG AGAGGTATTT GAGATTAGGT 000160 000161 TGTTTCTGCT TCCTCCGTTT ACCAATAGGG AGAGTCGGAT GGAGAGAGGC CTGCATCACC CTCTGGGGCA CATGGCTTGT 000240 000241 GTGGAGGGAG CAGCAGCTCC TTGGGAGTTG AGGGTGCAGA ATCAGGGGCA GCGTGGATGG CCTTGGGGTC AGGCCACCCT 000320 000321 GGGCTCAAAT CCTGACTGTT GCTGTGCCAC TGAGCATGTG CCTGAGCTCT CTGGGCCGCA GTCTCATGCT GGCTGGATGA 000400 000401 GTGGCATCTC AGGGCTGCCG TGTGCCACGA AGGCACCGAG AGCAGGACTT GTGCAGGATG TGCGTCCACC AGTACCATAC 000480 000481 ACCATCTTCC TGATGAGGGC CAGGGCAACC AAGGTCCTTT GTAGACACCA GCACCTTCTA ACTTGGTGAG GTCCTGGCTG 000560 000561 CCGTGCCGTG CATGGAGTCA CCTGCCTGCA AACAGCCACT CTCTATCCTG CTCCAGTCCA GTTTGAAAAA CAAGCAAGGT 000640 000641 CTATTCCAGT GAAGAGCCAC CAGGGAAGAG TCAAGGAGGG CATCTGCTGT TCAAACCCTG ACCCCCTCTT GCTAATGATG 000720 000721 GCATCACGCT TACTTTTAGA TGTAACATAC AGCCTCGGAG GGGTTGGAGG AGAGGTCCAT GGAGATCACC TGGCTCAGCC 000800 000801 TTCTCGTTTT CCAGATGATT TTTTTTAGTC CAAAGAGACT AAATGACTTG ACTAAGGCCA CACAGCATGT CAGCGGGCCA 000880 000881 GCTAGGACTC CACCCACAGC CCCTGAGTCT GGGGATCCCT GTGCTCTTGG CTCTGAGCAA GGCTGCCTCA CTTCATTTTA 000960 000961 GTTTAGTCTG TGTGACTTGA GCACAAGTTC TGCACACAAA ACTGTGCAAG GCCACTAATA GCACTCACAG AGCAGTGCTA 001040 001041 TCCCTTCCTT CCTTTGAAAT GGTGGAGGTG GAGACAGTAC ATACAAGAGT TACTCAAGAC AAGGATGGGG GTGCAGGGAG 001120 001121 GAAGCCGAGC CCTTCCATGC CACCTCTGAG ACAGCTGGAG GGCATAGCCG CTCCATGGCT GCAGCCCGGT TTAGAATGTG 001200 001201 CCAGGGGTGG GGTCAGGCAC CGCTTTCTTA AATGATCTTT CCTCTGTTGT CTCAAGACAT TTTCCAAGTA CCAGACAGGA 001280 001281 CAAAATGGCT TAGATGTAAG CCTCTCTACT TTGCCGCAGG CCCCAGTGCT CTCTGTTGTC CCACCTAGGC TCCTGCTGCC 001360 001361 TGCCCTGATG TCTGCAGATT CACTTGGTCA AGAGGAGTTC CTTCTATGCC TGCTGTGTTT TTCAGCCATA GCACAGAACT 001440 001441 GTTTTATGGG GGGAGCATGC TCATGCGCTA AATCAGTGGT CTCTCACTCA GGGAGGAAGA GAGGCCAACA TTTGCTGAGG 001520 001521 GCTTACTGTG CCCTGGGTTC TCAGCTGTCC CCACGAGGGG GTGCAATGCC CTTGGTTTTA AAGAGATGAA AATATCAAGG 001600 001601 CTCCAAGAGG TAAAAAACTT GCCCCAGGCC ACCTAGATGT GGCTGGTGAA GCTATGTTTG AACCCACCGC TGACTAACTC 001680 001681 CAAAATTCAT ATTCTTTTCT CTTCTCTCGG CTGTCTTCCA AGTATCCAGA ATGGACTGTC TGGAAAGCGT TCTGTTAGTA 001760 001761 CTTCTTGACT GTGGGACTAC AGGTCTTTGA GTTTCTCCTA ATAAAGTGAT TTCTGATG |
Predicted Small Protein
Name | NONHSAT013273_smProtein_1367:1588 |
Length | 74 |
Molecular weight | 7733.058 |
Aromaticity | 0.0547945205479 |
Instability index | 59.9698630137 |
Isoelectric point | 9.14849853516 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0356506238859 |
Amino acid sequence | MSADSLGQEEFLLCLLCFSAIAQNCFMGGACSCAKSVVSHSGRKRGQHLLRAYCALGSQL SPRGGAMPLVLKR |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHLLEELLLLLLHHHHHHHHHHHHLLLL LLLLLLLLLEELL |
PRMN | - |
PiMo | - |