NONHSAT013429
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013429 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1533 nt |
Genomic location |
chr10-:54316440..54515304 |
Exon number |
4 |
Exons |
54316440..54316901,54320766..54320875,54359911..54360632,54515066..54515304 |
Genome context |
|
Sequence |
000001 AGCGCTTAAA ACCACAGTGG AAAAGCCACA TGCTCCTGAT ACACTTGGGG GGACATAAAG GGAAACCCAC ACACCCAAGG 000080
000081 AGGAGGGCTC TGGCCATGCA AGGCTGAAGG CCCAGTGTAC TGATATGAAA ACTGAAGCTC AGACAGAAGA GGCGACGTTG 000160 000161 CTTTCTTAAC CACTGGATTT GCAGTGCTGT GGTTCTCAGA AGAGGCCAGG ACAGGTTAAT CCACTCACTT GGGAGGCAGA 000240 000241 TGTCTACATA TTTACTGATA TAAGAAGACA CTGAGATATT GCCCAATGGA AACTGCATCT TCAAAACAGC ATATATATTA 000320 000321 CAATTCCATT TTCAAAACTG ATGGACATAA TTGAAAAATT ATTCCTGATT TGATCCAGAA GCTCAAATAC CATCATATAA 000400 000401 AATTATTTAA AAGTCCAGAA AAACAGATGC AATTAACATT AAGAGTGGTG TTCTCTGGAC TGTGATTTTG GTTTTCTTTA 000480 000481 TAATTTTCTG TATTTTCTAA AATGTCTAAA ACAACGAAGT ATTAAAAGTG AGAAGAAAAT GAGTTAACTG AATCTTCTAT 000560 000561 TGAAAGATTT TATTTTGGTG CCTCTTGACA ATCAGAGAGC TTCAGCATGT AAATTTTCTA GTGATGTGGT ATGGAATAAA 000640 000641 CTTCCATTTA CCATGATAAT TTCAACTTTT CTTACCTCAC TTTTCATACA GGACTTTGCA TTAATCTCAC CACAGTAAAT 000720 000721 TTGTTTTTCC CACATTTTTT TTTTCTTTCT GTGGTCTCAT GTTTTCTAAT TATTTAAAGA GAAGCACTCA TTCTTTACTT 000800 000801 GGACAAAATA TTATTAATAT CCCCACCATT TGGGATGATA TTTTTATAGG GTATTATAAT AGGTTTTTAT GTATGAATTT 000880 000881 GACTATTAAA TTGAAATAAT TTACACTAAA TACAGATAGA AAGAATAACT TATTTAATCA GACCAGATGA TATGATTAAA 000960 000961 GGTTGAATGT ACAGCTGGTA TAAAAATGGT GCTTTGTCGT CATGAAGAAG GTGTATTCTG GGATCAAACC ACCTGGCTGG 001040 001041 AGATGCTTAC TAACCTCAGT TTCTTCATCT GACCTTACCT TTCTAAAAGA ATAAGAAGAA GATGATACAT ATTCCTCTAA 001120 001121 AGTCCCAACA GGAACCTTTT CCCCTCACTC CCTCCCCAGA GATGTGTATC ATTTCCATGA GTGTCTGTAC TTTTACAACA 001200 001201 TGTGCATATT AATAAACAAA ATATGACAAA TTATTTTGTC TTAATATTTG CATAAATCTA GCCATACTCT ACACCACTTT 001280 001281 TGCAACTTTC ACTATTATAT ATTTTGAAGA TTATCCGTGT TTATGCACAT AAGTTTATCA TTTTAACTGT TGAATAGTGT 001360 001361 TTCATTATAT GAATTAACCA TAATTCATCT ATTTCCCTGA GTGACAATTA GGTTTCTTTT TGTTTTTATG CTCTGATGAA 001440 001441 CAATCTTGCA ATTATTATCT TTGTATATGT CTTCATGTAT AAGAAATTCT CCAGGGTAGA CACTTAGAAG TAAAGGGTCT 001520 001521 GACTCAGAGA GTC |
Predicted Small Protein
Name | NONHSAT013429_smProtein_758:898 |
Length | 47 |
Molecular weight | 5510.4559 |
Aromaticity | 0.152173913043 |
Instability index | 45.4413043478 |
Isoelectric point | 9.42901611328 |
Runs | 10 |
Runs residual | 0.0560300207039 |
Runs probability | 0.0374050521109 |
Amino acid sequence | MFSNYLKRSTHSLLGQNIINIPTIWDDIFIGYYNRFLCMNLTIKLK |
Secondary structure | LLLHHHHHHHHHHHLLLEELLLLHHHHHHHHHHLHHHEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii |