NONHSAT013489
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013489 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6467 nt |
Genomic location |
chr10+:60058915..60065381 |
Exon number |
1 |
Exons |
60058915..60065381 |
Genome context |
|
Sequence |
000001 aaaaaaaaac atggataaga aaactatctc acagagttgt catgaaggtg gaatgcacag gaagcacttt ccactgtgca 000080
000081 caacacctgg taagtgTGTT CCATTATTCA TTACTGTCCA TTTTGGTTCA GCAGTTTAAC AGCATGTCAG AATGAGTAGG 000160 000161 AATCATAACT ACTGCATAGT CATGAGTGTT TCCATTCAAA GAAGCCATTT TCTTTATTAG AAACTATAGC TTAGTGGTAA 000240 000241 CTATAGTCAA CCAACTACAG TTGTTCTGGG GACTAAGGTT GCTTTCTTTG TTATACCCTT TGATTAATAA TGTTAAAAGA 000320 000321 CCCAGAAGAA GAAACTGGAG AAGGACAGAA GCAATAAACA CATCACACAA AGGTGAGGAG GTTGGAAATC TGAACTGAGA 000400 000401 GAAGTAGCTC AAACATTTCT ACTTTTTTCT AGTTCCTCTT TTGTCCTTTA GCCTCCTTTA TTAATATCTG CTCCATAGGG 000480 000481 GGAAAGCCTA GTGAGAAATC CAAGTTTTAG GGACCTCTAT GCACTTGTTA CCATGTCCAC CAGGGGGAGG CCTGACAACA 000560 000561 CATTTCTGTG GTAAGGTAAT AGGTGGGAGT GGGTCAAAGT CTCTTTTTTG TAGAAGTTTC TCATTAACAC TTCATCAAGA 000640 000641 TTAGAAAAAC AGTGATACTG TTGACGAATG CACGTGTGCC ACTTGATTTC AAAGAAGCAA GTTGATTTCA ACCGTCTAAT 000720 000721 TTTTTATTGG TGTGCTAAGA AAGGGGCGAA TATAAACCCT AAGGGCAGAA TCAAAAACCA GACTGTAAGC TGATCAAAGT 000800 000801 AAGGGGATCT TAGACTGTTC TTTTATCAGT AGGACAGAAA AATGCACACT GGCAGAGAGC TCTAAGAAAT TCCACATGTA 000880 000881 ATATCAAATA AAATTTCTAA TCTCACATTG CCTTCAAATA CATCTTAAAT TATAGGAAAT GTTTAATACA CTTCTGGGGT 000960 000961 GAAGCACATT TCTCTACCCT TACTCTTTTA AGTTTATGGG TTTTTTTTTT CCTGCTGGGT AAGAAGGATT CCATATATTC 001040 001041 ATAATTCCGC ACTCGGATGA AATGAAGAGT CAACTTTCTA TGGTATATCT CTGTGTATTT ATATATTTGT AGTATTTATG 001120 001121 ATGTCTTACA AATACCAACT GCAAGCTAAA AAGTCACTTT ACAGATAGAA ATCAAGGTAT AAAGTATGCA ATTAGAAAAG 001200 001201 AAGTAAACAT GCCTTTGGGG ATTATTAttt atttatttat ttttgagacc gagtctcgct tggtcgccca ggctggagtg 001280 001281 cagtagtgcg atttcagctc actgcaaact ctgcctccca ggttcaagtg attctcgtgc ctcagcctcc tgcgtagctg 001360 001361 ggattacagg tgtgcccagc taatttttgt atttttagta gagacggggt ttcaccatga tggccaggct ggtctcgaac 001440 001441 tcctgacctc aagtgatcca ctgcctcagc ctcccaaagt accgggatta caggcatgag ccaccgtgcc cagccTGATT 001520 001521 ATAATTTATA TTGGAAGTTA TTGTATAAGC AGAAAATTCA GAGAGATCCA GAAAAGAGGT GGGAGCTCTT TGGGTTTTAA 001600 001601 TAGTTGGAAA ACACTGCATG GAAAAAATCC AGCATGACCT GGATCTTTAT AATAGTATAC ATAAGGAAGA GACCTGTAAG 001680 001681 GAAACACCTG TCATACTTGT CTGTTCAATG GCACTAACAC AAATAAACAA ATAGGCTCAC TCTCAATGTT TGAATACAGC 001760 001761 CCAAACAATA GAAGCAGAGC TCAGTGTGAC ATGGAATTCC ATGACAACCT TCCTTCTAAG CAAATTCCAT TCAATTTTCA 001840 001841 TCCCCACTTA ATCACTTGCA CCATCAGTTT AAACTAGATT TTATAAGAAC CTGCCTGCta atgaatacta ttatttctgc 001920 001921 atagggtttt atagagattt taaaatgctt ctcatatatc atctcagttg atcttcacag caaatctgta aagttggtag 002000 002001 ggtttattgg tccttatttt atagatggcc tgaaaagtta ggtgccttgc aaaggtcatg ccattaacaa AGAAGGTATA 002080 002081 TAATGTTGAC GTGAAGTCCT ATATGCTTTC TGCAGCAACA GATCACCTCT TGTATCATGA CCAAATGTGA ATCTAACTCA 002160 002161 TTTTAATTCA TTTTTTCTCT TCTGTCCCTT CCTCTATCTC CATGCTTCTT TTTTGAAGAT CTTCCCTTAA TTTTTTTTTC 002240 002241 CTGAAGCCTA CAAATTTCTC CCACTTATTT ATCTCTTTAT TATTTATGTA GCTCTGATCC TTCAGGCTAC ACACCTTTTG 002320 002321 CAAGGATATG GATAATGTCT ACTTTCCTTT GATTTTTTTG TCCTCCTCCT GTTTGTTCTA TTCTGACTCT AGAGACAACA 002400 002401 GGCTATTTGG CATAGATTTT ATATGTGAAT TGGTCCCTTT CCTTCTTATC TGAGGCATTT AAGCATGAGT TGACCCAAAT 002480 002481 TGACATGCTC TCTGGACTTC TATTCATTAC ACAGACTTCA GCTTCCACAA CATCTAAAAT AGTCTCTAAC TGGATATCAG 002560 002561 ATTTCAGAGT GGTTTTTTTT TTTTTTTGGG ACTTACTGGT CACAGTGCCA CCAAACCTTT ATATTCTCAG GTCCACATAT 002640 002641 CAAAAATCTG CCCTGGATTA TAATATTATG CTGCTTTACC ACAATATGTC TTCCACCTAA TCATATGATC TCCAACAATT 002720 002721 TTATTCCTGA ATAATAATGT ATGTAGACAA ATATTTAGCT TGCTGCTTAA TCCTGTGTCC TTTAAAAACT GTTCTTCAGA 002800 002801 TCTTATTTCT TCAGATGTTT CTTCACACAT AAACCATAAG CTTTACATCA CACTCCATCA CAGTCTGTCT AAAACTAGGC 002880 002881 AAAATGGGAT TTCACATCAA AGTTTCACCT ATATAATCCC TGAGGACCAG CTGACTTGGA AATTAATCCT AGCAACAGAT 002960 002961 AATCTTCGCA GAGATTTCTG ATGAAGTGTT TTTTTCCCTG AGACATTGCT GGCAGTCCTT TTTAATTCCG GTGACCTTAG 003040 003041 AGGAATAAGC AGATGTCCCA ACCCTATCAG AAGTTCCTTT TGCCTTTTCC CCTCCTCAAG GTACAGCAGA ATTTATCTCT 003120 003121 CTGCTTTTTT TTGTTCCATC CTTTATACAT TTAAAAAAAG AGAGAGATGT TACAACATTT CTTTTGCTTC TTTTTCTGCT 003200 003201 ACCTTTCTAC TCTTTGAGAC GACTATTAtc agacaaagct ggctgcagat cttggctcca ccccacttta tcacctgtgt 003280 003281 gaccctcagc aaatgaacct ctgaatctct gaacctcaga ctctgtgtgt gtaatataca aaaggtgata gctacttcaa 003360 003361 aaggctgttg tcaggaacaa ggcagataat atacctaaag cacgtagcac aatgtctggt tcataataag tgcCAAGACA 003440 003441 CCATGttatt atttattatt attatttttC CTCTTCTCAA TTTCAGTTCT TCCCAGTGCT TACTTCCCAA TTACTTCATG 003520 003521 GCATAATCTT TTTACTCTCC ATCAATTATT TTTCAAGGAC TCTATTCCCT CTCAAAGTGG ACTACTAGCT AACCTTCTAC 003600 003601 CAAAGCAGCC ATCAATATTC AGGACGCCAA TAATACTGAT TAAATATTCA CTGTAATGTC TAGTCCTATA TTAGACATGA 003680 003681 TGACCTCAGA GATGTAAACT GACCTCAGAG AGAAGGGCTC TTAAACAGCT AGAACTCCCA CGTTTCGATT CCTGGACAAT 003760 003761 CCGCAAATAA ACATCCAAAG TAGATACATT TGCATTTGTC TTCCCATTGT CTTTTGATTA CTCTATTTAA TTTTTTAAAA 003840 003841 ATCTGAAAAT AAACATTTAT GAATAATGTC CATATGAACT AATGGATTAA ATCTGAACCC CTCACTGGAT ATTCAAGGCC 003920 003921 CTTCATAATA TAGCCCTAAC TTAACTTTCT TATCATTAAA TACTCCCTAA TGCCTGCCTT ACGTTTCAGC CCTTGTCATT 004000 004001 ATTCATTATT CTGCAGTATT TGCCTTCACA TTTTGGCCTC CGTATCTTTG CTTATGCTAT TCCATTTGCA TATGTCTTCT 004080 004081 CTCATTCTTT TTTTATGTTA AACATTACCT ATTCTTAATG TCCATTTCAA ATTCTCTGTC CTCTGACATC ACTGACAATC 004160 004161 TTACTCCTTT TGCATTTCCG AAACACTCAT ATGCAGGTAT CTATTCATTC AGGGAACAAG TACAAGGTAT CATACTGATG 004240 004241 CTTTGGATAC AAAGattaat ttttaaaatt taaaaCAATT CCAGCCTAGC AGGAAAACTA ATAATAATAC CTATAAAACA 004320 004321 GAATAACTAG TGTTAAAATA AAAGTATATG CAAAGTACAG TTGTTCAGTC TATTCAAATT CTGTTCTTGG GGGCTACAGG 004400 004401 GTGGTTAGAC TGACTGTCTT TCCAGAGAAA GTGGCACTTG AATTGGCACA CAAAGAATAG ATGAGATGTG CCCAGTCCAA 004480 004481 GAATAAGAGG AAGTTAAGAG GGGCTGTGGG GGTAGGGGAT GGGGGGCGGG AAGCCACTGG GGAAAAGAAG AGGCATTAGG 004560 004561 TTGCGTAGTA TGCTAGTGTA GATCAAGGTT ATTCAGTGTA GTTCTTCAAG ACCAAGCTTG ACTACCCCTC TGGCACTGTC 004640 004641 ATCCTTCATC TGCAACCCAT ACCCTAGAAA TCAGCTATTC CAATCTAATC TAGATCCCAC ACCAAGCTGC TCTAATTTCT 004720 004721 TGCAACACCT CCCCACGtct ctctttcttt ctctttcttt ctttgctttt gtctttcttt cttttctttc tttctctttc 004800 004801 tccttctttc ttttctttct tgacagagtc ttgctctgtc actcaggctg gagtgcagtg gcgtgatctt gagttcacag 004880 004881 cagacttaac ctcttgggtt caagcagttc tcccacctca gcctcatgag gagctggcac tacaggcatg tgccatcaca 004960 004961 ctcagctaat ttttgtattt ttttgtagag acagcgtttc accatgttgc ccaggctggt ctTTTTTTTT TTTTTTCCTG 005040 005041 GGTAAATCTG CATATTGCTT CCTCTGCAGA GCCATCCCTA CTCCTTCAGT CAGGTAAATT AGGTGCCCCT TCCTTATGGC 005120 005121 CCTTAGAACT GTGCATAGCT TTTGTCAATA GTTTTACAAT GACTATAAAC CTTTTTACTT AAGCTATAAA GTCTTATATA 005200 005201 TTTCCCTGCT GTCTAACATA TGTTGAATGA ATGAATGAGT CAAtgggcac ctgttatgtg ccagaaattc tggtaggccc 005280 005281 taggagggaa agtgcagtaa gacataattc ttgcccttaa ggagtttaaa gctcagATGT GTCATAAGGG GTGTATCAGT 005360 005361 GGCTGAGGAT GAAGGGAGAA GAGAGAAGGA GGTATTGAGT TGTGGGAGCC ATTGGCCGAG ACTGGAGAGA GGAGACAAGG 005440 005441 AGACGGATTC CCTTTGTGTG TTCCCAGCAC CTACCAACAT AAAGACTGAA AGCTGTTGGA CTCATGCTCA AAAGAATCAT 005520 005521 AGGCAAGTTG TGTTTGTCCC ATTAAgctaa catttaaaaa tcagaagatt ttatccaaaa gatggatttc caacttcttt 005600 005601 tgaatgatct ggtaacatgg gactgtagtc tcagaatgga aaaacagctg ACCTTTAAAG ATAAGGTATT AACTCTCACA 005680 005681 TTttttattt taaataaacc tatttcagtt aagaaatgaa ttactttaaa gaaaaataaa ggtaaataac tagacaggca 005760 005761 gtccttggac atggcctaaa aagtgaaggG GCTCTTAAAT GATGGTTCAA GGCCATAGAG AGCAACACAT GGGCCTCCAG 005840 005841 TTTGTCTACC ACTGCCCACC CTATCCCAGT TCCAACTTCC AACATTTTAG TCAAAATGta tacataagtt ggacatatct 005920 005921 gtaaaatcgt tgtgtattgc ttcctttata aagtgccatc tttgtaatta ttttccaaat ttagtctcat ctgatgttta 006000 006001 tattgcaact tctactttcc tgttatttgt attttcttag aatgtctttg ttcattcttt taaagttttc taagtaattt 006080 006081 taatttagtg ctctctctat atacagagta tacaatgtaa atgttctttg ctttataatc caagcagatt attttataat 006160 006161 agataggttt agcatattta catttatgga tataacagat gagtgctagt tctatcattt ttttgatgat ttctttctta 006240 006241 tttttagctt atttttaatg atatttcact atatgttcta tgcttgtttt gtgttgttac attttttctg acaattggaa 006320 006321 aagtttgtat ttttgtttta TCTTTATTGT GAAATATACA TACTCTTCTA tttgttttgt ttgtttgttt gtttgtttgt 006400 006401 ttTTAGATGG CGTctctggc agccaggctg gaacgcggtg ggtgatctcg gctcactgca acctttg |
Predicted Small Protein
Name | NONHSAT013489_smProtein_1745:1876 |
Length | 44 |
Molecular weight | 5094.6986 |
Aromaticity | 0.116279069767 |
Instability index | 59.0906976744 |
Isoelectric point | 6.21942138672 |
Runs | 5 |
Runs residual | 0.0410243010191 |
Runs probability | 0.0224165341812 |
Amino acid sequence | MFEYSPNNRSRAQCDMEFHDNLPSKQIPFNFHPHLITCTISLN |
Secondary structure | LLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLEEEEEEEEL |
PRMN | - |
PiMo | - |