NONHSAT013565
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013565 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2208 nt |
Genomic location |
chr10+:63241607..63256038 |
Exon number |
5 |
Exons |
63241607..63241708,63242547..63242583,63252770..63253587,63254039..63254525,63255275..63256038 |
Genome context |
|
Sequence |
000001 ccatgagatt cccaaataaa cttcctgcat gcaaatctcc atctcagcat ctgtttccct gaggaggaac caacctAAAA 000080
000081 TGAATTGCAA ATTAAAATCT CAgaagtgag tcaaagcaac cagaatttcc cttcccaagg tcaaaatagc cataatctgt 000160 000161 cagtcactct cacacgtaat aaatgtgttc aatgaaaaag tggctacttg agcttgtaac tcaatctcac aagtgttttt 000240 000241 cctcttgaag accatcatac agcagaatgt tttatacata attcccattt caatacacag aatgttaaaa atatctaata 000320 000321 aaattcagga tcgggattta atgaattaac aatgttttct gcttcattgg gtacattttt aaacaaaagt gacatttctt 000400 000401 gttttcttcc tttttttaat aaggtgaggg catgtcggtg atgaaactat cactactgtt caaggtgcca gaagtttgac 000480 000481 ttaccatcgc ttttgaacaa tcatcactac atgtcagcgt gggaaaaaga ataaaataac atcttaatat tattatgaaa 000560 000561 acagttttgg cctcatggac cccttgaaaa cctatcaggt taactgcaga ccacagtttg aCGCTTTTAA TGTATCCTAG 000640 000641 AGGATATCCT TCTTTGTATT ACTGTGGGGT ACCCATTGTC GTTGAAATTT GTTTGATAAT CCCCCTTTTT ACCTCTCTTC 000720 000721 TGTCATCACT TTGAATCACA ACTTGCATTT TTTATTATTA GGGTTATCTT TTTACATGGT CGCCTTGGCT ACCCCAATAG 000800 000801 ATAGTATAGT Gccttgttac ccaaaatatg ggccgtggac caatagcatc agcatcacct aggagctttg aaaaaaatgc 000880 000881 agaaattcag gcctccttcc agtactactg aatcacaaac tgcacttttc tttttttttt tttttttttt tttttttaga 000960 000961 agtgggtgta taactaagtt aagctattta gagtatgcta tccctgtaaa cagagtaatt tgtccattgc tgggcatgtg 001040 001041 taagcaagac caatcagagt ccattttttc agaaaaatat gggtggtggg agaaaggaaa tgctcctctc tctgggatta 001120 001121 ttagctgtat ggataatgca aatccaaaaa ttgctgtggc catctttgct gcaacataaa ggaaagttct ctgaagtgat 001200 001201 tccagaaaag aggaggacag aagtcagaga tggagagaga tagacccttg atgacatcaa atgagcctct ggatccagct 001280 001281 ctgcctgaag tcatctgccc catgattttc agtaatgtga atcaacaaca tattctgctt ttctagctaa tgttagtttg 001360 001361 aatcgggttt ctgttccttg caaccaaggg ttttgacATA AGACGAAAAA CTCTGTGGGG ACATATGTAT CATTTATATT 001440 001441 TTTTgtccac cttgcctGGC ATGATAATTC TATGGAATTA CAGGCAGAAA AACAGTCTcc cctcaaagat gtctacacct 001520 001521 taatctctgg aacctgctaa tatgttgtgt tacatggcag aaggggcttg cagacttagt gaaatttaca gatcttgata 001600 001601 tggtgagatt attctgtatt atcaggcagg gttcaggcaa agcacatgag ctcttaaaat agtttctttt tttccaggca 001680 001681 gagaacagag gagagatgag gcaaaaggga atattagaca gattcaaagc ttgaaaagga cttgatccac tatgaggcca 001760 001761 ttaatgaagg aatgcaggct gcctgtaaca gttgaaaatc accccagcca acacccagca aggaaatgga gaccatagtc 001840 001841 ctctaactgt atggaactga attctgccaa caaagtgaat aagatgggaa gtgaagaccc tcccagagcc tccagaaagg 001920 001921 aagagagcca ttcagacacc ttgatttcag ccttctgaaa cttggagcag agagccggct gtgtcaacct gaacctgggt 002000 002001 ttttaaccta caaaactgag aaataatgaa tAGTGAtttt tttttttaaa gatggagtct agctccgtca cccaggctgg 002080 002081 agtgcagtgg cacgaatagt gattgtttta agccactaaa tttatggtag ttttgttagg gcagcaatag aaaactaata 002160 002161 caTATGTAAT ATAGCATTTT ATAAACTAAA ATGTCAGGCA AATATGTG |
Predicted Small Protein
Name | NONHSAT013565_smProtein_1229:1345 |
Length | 39 |
Molecular weight | 4410.1227 |
Aromaticity | 0.0526315789474 |
Instability index | 54.6421052632 |
Isoelectric point | 4.50103759766 |
Runs | 7 |
Runs residual | 0.0115997229917 |
Runs probability | 0.0133873369167 |
Amino acid sequence | MERDRPLMTSNEPLDPALPEVICPMIFSNVNQQHILLF |
Secondary structure | LLLLLLLLLLLLLLLLLLLHHHLHHHHLLLLLLEEEEL |
PRMN | - |
PiMo | - |