NONHSAT014100

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT014100

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1525 nt

Genomic location

chr10+:77056141..77121436

Exon number

3

Exons

77056141..77056409,77118268..77118465,77120379..77121436

Genome context

Sequence
000001 GAGTGGCATC AGGATGTCTG AGAGGAGAGC ATGGTGTTTT TGCTTCATTG GATCCATGCA GGTCTTGGAG GGTGGTGGCC 000080
000081 CACTCTTTCT GGGCCAAGTA GAGGGTGGCT CAGACACCCC CCCTTCCTCC AGGCTTCTCA TCTGTAACTG GTGAAGCCCG 000160
000161 GAAGAGCTTG TTGTTCAAGA GGAAATCTTG TGTTACTTCT TTATGAAGGA CTCCAGCCTG GTGGAGATGA ATGAGTCCTG 000240
000241 AAGATGGAAT CGAAGCTGTT TGGGCACAAT ACTTTAATCA GCATTTAATG ACCCAGTCGA AAATTCATTG TTTGGACCCA 000320
000321 AGCACTGGTG GGAAAGGCAG GAGGGGAGGC CTGCCTTCCT TCCTCCCTCC CGAGCCCTAC AGCAGGCCAT GGAGTGGTGA 000400
000401 GCGAGTTCGT ACAGTGCCAA CCACATTCCC AGAAACTTCC AGCAGAGGTT AATCCTGCTC CTCTCAGGTG GGCTTGGCCC 000480
000481 ATTCTCTAGA CTTTGGAAGG TAATGTTCTA TAGAGGCCTG TTCTGAAGCT TTACCAGGTC AAACCGGAGA AGAACCCAAC 000560
000561 AAGTAACTCA TCCCAGCCTA ACTATTCTTC AAGGGCAATC AACCTACAGC ATCCAAGCAC AGAGAAATCA AATCCATGGA 000640
000641 GAATCTTCAA ATTAGGCTCA GAATCCATTT GGGTCAATGA ATTTACTGTT ATTAAGATCT TAGTTGTGTT CAACCATGAT 000720
000721 TTGACATACC TTAGAGTGAG AAGATATTCT TCCTGGCCTC AGACTAGTTG AAGGTAGAGA GAGAGACAGG CCCTTGGGTG 000800
000801 TGGGGAGACC TCTCCTGGGA TAATACACAC AAAAAACCAA GAGCTGCTCA CTGTGGTGCA GGAGACAGCA GGGCCTGAAG 000880
000881 CCAGAGGCTC TGTGTCCTTG AATACAATGT TTTACTCCTC TGACCCCTGT TACTGTGATT TGGAGAGGCA GACAATATAG 000960
000961 GATGGGCTTT GCAGGCAGGG AGGTCCAGTT ATAATCCCAG CTCTTACTAA GTTGGGTAAG ACTCACTCTG AGACTTAGTT 001040
001041 TCTTCTGTCA TCTCTCAATA GAATCATAAA GGTACTTTCC TCTTAGTGTT GTTTTAAAAT TCAGTAAAAT AATGCAGGCT 001120
001121 TAGCACAGGG TCTGATGTAA ATTTTCAATG AATTATCGTT GTCAATATTG TTCTGGAAAA CAAGAGGGCA TATTAGAAGA 001200
001201 TCAAAAGTAC TGCCAAGCAT TGAAGTGCCA ATTCTAGATC CAGTCTCAGC CCTCTGAGAA TGGATATCAT TGTTTTCAAG 001280
001281 CCATTCAGAA ACCAATGTGA ATTGAACACC TAGTATGAGC TCTCTGAGGG AAGAGCCAAG TCATGCATTT TTTATCTTAA 001360
001361 GGGGTCTTCA ATACCTCTAG CCCAAAACAG TATCTCCATC AGGATTCTTC TCTGATAGTG TTCATTTCTT TTTTCTCAAT 001440
001441 GGATGCCTTA AAAAAAAAAT CCTACAAGGA AACCTGTACT CCTCAAATAC ACCACTCAGG TGACCATTAA ATCATTTACA 001520
001521 TTGTT
[back to top]

Predicted Small Protein

Name NONHSAT014100_smProtein_230:451
Length 74
Molecular weight 8117.9936
Aromaticity 0.0958904109589
Instability index 77.5068493151
Isoelectric point 7.96209716797
Runs 7
Runs residual 0.0482545293858
Runs probability 0.0306356776946
Amino acid sequence MSPEDGIEAVWAQYFNQHLMTQSKIHCLDPSTGGKGRRGGLPSFLPPEPYSRPWSGERVR
TVPTTFPETSSRG
Secondary structure LLLHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEE
ELLLLLLLLLLLL
PRMN -
PiMo -