NONHSAT015092
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT015092 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3825 nt |
Genomic location |
chr10-:80777214..80828536 |
Exon number |
5 |
Exons |
80777214..80780396,80825504..80825576,80826205..80826343,80827145..80827194,80828157..80828536 |
Genome context |
|
Sequence |
000001 CTTTCCTTTT CGCCTCTCCT CGTTCTCTCC CTCGCCTTTC CTTTCCTTTC TCTTCCTCTC TTCCTCGCTC CTCGGTCTCG 000080
000081 GCGCTCTCCC AGCTTTTCTT CTCCTGGCTC CTGGTTCCCC GCTACGCCAC CAGTCCACTC ACCTCTCTCC TTGCCCTACT 000160 000161 CCCTCCGCTA CTCCCTGACG CCCCCTGCAG CCCCCAGCCC CCCTGCAGGC CCCAGCCCCA GTAAGTTTGG AGAGGGGAAC 000240 000241 AAATGCTGAG CCTAGGTAGG GACCACCTTG GGGAGGAAGC CAAAATCACA CTGCTCACCC GAGAGCCCCT GCCCCGCGCT 000320 000321 GGCACGCCCC CGCCTGGAGT GCACTCGTGG CCCCGGGCGC TGTCAGGTAC CCGAATTGGG GCTGCCACCG TGTCGGAGGC 000400 000401 GAGGCGAGGA AGGGAGCTGG AATAACAAAG GTGGCAGCTG AGCATCCCTG GAGAGGGTGG GTGGTATGAA AGCACTTCCA 000480 000481 GACCTCTAGG GACACCAGGG AGTCATGGTC CCAGCACATT GCTGTGTGAT TGAGCCCCTC CTCAGCCTGT GGGTGGCCTA 000560 000561 AGTTCACAGG GAGGTAATGG GGTAGATTGG ATACCTCTGG GGTCTTGGAA GAAGCTATGA CTTATTTACT GTCTACTATG 000640 000641 TGATGGGAAG ATAAGACCCA GAAAACAGAA AGGACATGTT TAAGGCCATG CAGCAAGTTA GTGCCTGACC TGAATATTGA 000720 000721 AGTGAGGCCC TACTACCATC AGCCATGGGA ACCATGGCTG GATGGGTCCC AAGCAATGAA GACCTTCTGG GTGTCTAGGG 000800 000801 GAGAGGTTTG GGCCCTCCTC CATGTGCGTG TGTGTGTGCG CGTGCAAGTG TGTGTGTCTG GGAAGCCAGA AGATTACACT 000880 000881 CTTCTTTCTA GGCCTTCTAG CCCTTGCTGG AAGGCCTGTA GTGAGTGGAT GGCCTGCCTT ACCCTCTGCA CATCCCGCCC 000960 000961 TGTTTATTGA GATTTCCATC CAGCCTGAAC TCCTGTGGGG AGGTGTTATC TTCTGGACCA GAGCCCTATC TGCCATGAAG 001040 001041 CCATTGTGGT GTCACAGGGG CTTCTGAGAG ATCCCAGGCT GGAGACGGAA AGCAGAAGAT TTGAAGTGGT GGGAGGCAGG 001120 001121 GGCTGGTGTC ATAACACACT TTCCACCCCT GGGCTGGGAG GGGCACTCCC TCCTGCTGAA CTCTCCCAGG CCAGTGACCT 001200 001201 CATCTTGCTC CTGTGCTTGT TTTCCAAAGG GTGTTGTAAG TTGACTGTCT GCTTTCTTCC ACAACACTCA AAGTGTGGCC 001280 001281 TGTGGAGCAA CAGCTTCAGC CACAGCTGGG AGCTGGTTAG AAGTGCAACA TCTCAGGCCC CACCCTAGAA CATTAACATC 001360 001361 TCTGGAGGTA GGACCCAGGA ATCTGTTTCA CAAGTCCTCT TCTGATGCTT AGAAAAGTTT AAACATCACT GCTTTACTCT 001440 001441 ATTTCTCGAC AAAAAGATGA CATTCAGTTT GGCTAGAATT AAAAGGGGTG GGTGTTTCCT GGCAGGTTTT AGAAACCTAT 001520 001521 TTAAATGGTT CCATTGTCCA TTCATCCATC CATCAACCCA TCCAACCATC CAGCCAGCCA TCCACCCTCT TTTCATTCAA 001600 001601 CAGACATTCA GCTGCACTCG GGAGTTGAAA GGGGAAGGCT CGGGACCCTG GGCTCCTCCA GCTTGCCGTG AGACACCACT 001680 001681 GTGTGGCAGA AGAGGTGGCC TCTGTCCCCT TTATCCTCCA AGTGTACCTG TGGTCTTCAG GCCGGTCACT TGCTTGAATC 001760 001761 TGAGTGTGTG TCTCTGATCT ATAATCCTAA AAAAGCTACC TAATGCAGGT GTCCAAGAGG GAAAGGGGAA GGAATTGCAT 001840 001841 GCACTTGGTG TCTATTGTGT GCCAGGTGTG TTCACACGTG TTATGACCTT CCACTCTTCC AGCTGCCCTT CATACTGGAT 001920 001921 AGCATTATTC TTATTTTACA GAGAAGAATA TTGAGGATCA AAGAGACCAA GACTGCAAGC GTAAAAACTA AGATTGGAAC 002000 002001 CAAAGCCAGT TCTTCTTGAT CCCAGGGTCT GCGCCCTTCT TCTGTTCCAT GTTTCATTGT TCTTGGTGGA CCTGGGGATC 002080 002081 AATAGCTAGA AGTTAAAGGA CAAACTGATT TGGGAAGTGC TTCCAGTGCT GTCTTGAGTG ATGTCTAGAG ATTAGCAGAC 002160 002161 TGGCTGTGAA GTGGTGAGCT GCCCATCACT GGAACCGTGC AAGCAGAGAC TGGTCATGGT GATCACGGTG TTGGTCCTGT 002240 002241 GTGAGTGTGA TGTGGGGAAG AATTGAGACC AGATGACCTT TGAGGGCCTT CTGCTGTCTG AGGCGGGCCT GCTTGGGCCT 002320 002321 GCTCCCAGGT CAGTGCCCCA TGGATGGAGC CTCTGAAGCC AGCTGCTCAT TATCTGTGGA TCCTCTGCGG GGACACTGCC 002400 002401 AGCTCCCAAA CAGGAAACAT GTCCAGAAAT CTGTAATTAG AGCTGGGAGC CACAGGCCTG AGAGGTGCCT GCTGCAGCTT 002480 002481 CAAGTGCAGA CACGCCACCC TGGTTAAGTC CCTGGGAGAG AACCCAGTGA GTCAGGCCCT CAGATCTTCT CCCTGCCTGT 002560 002561 GGCACCCCCG CCCCACCCCA TTCCCCTTGG AAGGAAACCT GCTTTGGCCA GGAACCTACT GGGTGAATGG GTTTCATATA 002640 002641 CATTCTCTCC TCTGTTCTTC CCCAGAACCG TGGGAGAGAG GAAACATCTG CCATGATGCA GGCAAGGAAT GCAAAGCTCC 002720 002721 CAGACATCAT GTGGCTCACT CAAGGTCACC CTACTATGGC CCTTGCCTTT CTGAGTGCCT GGTTTGACCT CTTGATCCCT 002800 002801 CCAGGGGAGA ACGTCACAGT CAAAGGAGGG GTGCAAGAGG CCAGTGGCAC ACAGAGAGGT CTGTGTGGGC CTGAGTGGCT 002880 002881 CCTGGGTCTT CCCTGACTGA CCATAACGCC TTTCAGCCTT TCTGAATCTG CCATGAAGGG ACGGGTCCTT GCAGTGTTCC 002960 002961 TCTGCCAGGC TGCCTGGCAA CCCATGGCAA TTGTGGTGGT GTTAAAACAT GGCCACAGGC CAGGCACGGT GGCTCATGCC 003040 003041 TGTAATTCCA GCACTTTGCA TAGGGTATGG CAGAAGAGAC CCTAAGTGAG TAAAGACCAT GCCCCTGCAA ATTATACTTT 003120 003121 GTTTGCTGGA ACACTCACTC TTGGAGCCCT GAGCCACCAT GTAAAGAAGT AGGAAGATTC ACTGTCCTGA AGCTGCCATG 003200 003201 TTGTGAGGAA GCCCAAGCCA CATGGAGGGG CCATGTCTAG GTGCTCCAGT CAACAGTCCC AGCTGAGCTT AGCCATCTAA 003280 003281 CATCCCCAGC TATTTTAGTT TTTCCTGAAA TCCCAGAAAT CATGGAATAG AGACAAATCT CTCCTGCTGT GCTCTGTCTG 003360 003361 AACTGCTGAC CCACAGAATC TGGGCACATA ATAAAATTAT TTTGTGCCAT TAGGTATATA GTTGATTTGT TATGCAGCCA 003440 003441 TAGATAACCA GGACAGCTAT GCCAGCTATG AAGTGCCATG CAGTCATCTC GGGGGTCCCA CTCACAACAT CTCCCCATAC 003520 003521 TCCTAGGAAG CTGGCTGGGC TCAACTCTAA GTGCAAAGCA TTGTGCAAAG GGAAGGGCAT GAAACTGGGG GGCCCTGCAT 003600 003601 CTCCTGGGGG TTAGAGTACT GAACTTCCTC CACCCACTGC CTTCTCAGAG ATGAGCACCC TACATCTGGA TCTGCCTCAG 003680 003681 GCCCTCTTGT ATATGACTAA GAATATTGGC TTGGTGTGGT GGCTCATGCC TGTAATCCCG GTACTTTGGG AGACTGAGGC 003760 003761 GGGAGGATCC TTGAGCCCAG GAGTTTGAGA CCAGCCTGGG CAACACAACA AGACCCTATC TCTAC |
Predicted Small Protein
Name | NONHSAT015092_smProtein_821:1066 |
Length | 82 |
Molecular weight | 8831.6882 |
Aromaticity | 0.111111111111 |
Instability index | 49.2086419753 |
Isoelectric point | 8.83038330078 |
Runs | 15 |
Runs residual | 0.0430054778841 |
Runs probability | 0.0471000412178 |
Amino acid sequence | MCVCVCACKCVCLGSQKITLFFLGLLALAGRPVVSGWPALPSAHPALFIEISIQPELLWG GVIFWTRALSAMKPLWCHRGF |
Secondary structure | LEEEEELEEEEELLLLHHHHHHHHHHHHHLLLLELLLLLLLLLLLLLEEEEEELHHHHHL LHHHHHHHHHHLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooooooTTTTTTTTTTTTTTT TTTTTTTiiiiiiiiiiiiii |