NONHSAT015220
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT015220 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3809 nt |
Genomic location |
chr10-:81805989..81838949 |
Exon number |
5 |
Exons |
81805989..81808934,81813152..81813342,81816075..81816161,81820572..81820689,81838483..81838949 |
Genome context |
|
Sequence |
000001 ACGCCTCACC GCGAAGTAGC CCAGCCCCAG GACTGTGACC AGAGAGGGCA AGGGTCTTGC TGGACGGAAA TAGGCGGTAG 000080
000081 CCGCATTGCT GGCCTCCGAC TTCACCATCC TCTTGAAAAA CCCAGACACA GAGTTGGCTG GGAGCTCCCC AGCCGTCCCC 000160 000161 GCCCCCATAT AAGAAAAGCC TGGCTAGCCG GTTTCTCAGG GCCCTGGGCG CCCGCCCAAG ACCCTGGCGG ACCAGTATGC 000240 000241 TTGCTCTCAT TGCGGAGTCT GGTCCCCTCC CCTCCGCTCC TAGCGCGCGG GAGTCGGGAT TGTGCTTGCA CGACTTCCCC 000320 000321 CGGCCCGCGG CCTGTGAGCC CAGGTCCTGG GGTGAACCGA GCGCTCGCTC GTTCGTCAGA CCGTAGCGCT CCAGCGGCTG 000400 000401 TCCTTACTGT GTAGTAGCCA AAGCTGAGGG TGATGACTGT GAACCAGAAC AGACTGCCTC GCTGAAAAGT CACTTGGAAC 000480 000481 TCTTCTGTGG CATCTGAAGC AGATGGACGA AGCCAAGAGG GCCGAGAGTA TCTCAGCACC TAGAAATGGA CAAGGCTGGT 000560 000561 TATTAGAACA AAGATTTCGC AGGTGATTTG ATATTTCATG AAATTCAGAA ATAATTTGGA GCTTTTCAAA CCTGGGATAT 000640 000641 GGAAGAAACT GACACTCCTG TTCTCTGGGA AGGATCTCCC ATTAACCAGT CATAATGAAG TAAGAACAAG AAGATGGGGA 000720 000721 AGAGGAAGTG TAAAACCGTG GCTTAAATTT GCCAAGGATA AGCTGAGTGT ACTTCAGCAG TCATTTGCAC AGAATCCTTA 000800 000801 TCCTAATTTT ACAACCAGGG AAAAACTGGC TGGACAGTCT CTTGTCCTGT GTTTGTAATT GATAACTGGT TTCAAAATAA 000880 000881 AAGCCAGACC ACCACTTAGA GAGAGACACA GAATGTTCAC TGCCAGGGAA CTGCATGATT CCTCTGCCAA AGGCCACCCA 000960 000961 TTTACAAGAA TCCAGGAAAA CCAGGTGGAA TCTCCCAATG ATGACCCTGA GCAGAACTTC TTGTACCCAG GAAGTTCTAC 001040 001041 TGGGTGGAGC TGGCCACTCT TCCGTGGAGA CACAGGGGAC TCCCAATTAA CATGATGGCT CAAATAACTG TAGCCTTATG 001120 001121 GATTAAAAGG AAACTAAGCT GTGATTTGGA GTATCCAGGT GATACAGAAA ATGGCCCTTG TCGATGTAGA TCAGCATTAT 001200 001201 TTCCTTATCC TTCTGCATCT CCTCCTCAGT ATTCTGAAAG GGACAAGCCT GAGATGGGGG AAAGCCAGCA TGCAAGGCCC 001280 001281 TCCCCTTTGT GCTGTGTTCA TGGTGTGCAC GGAGAGAGGC AGCAGCAGGA GGAACAGAAA GGTTATTTTC TTTACTGACT 001360 001361 CTTTCAAGGA CATCAGCAGA ATGGTTGGGA ATGTCATCAT GAGCAGCCTC AGCCTCAGAA TTACCAGGAG AAGCTGGTCT 001440 001441 TCCAGGATCA GGTTCTAATG TATATGAGTC ACAGGATTTA GGGAAGCAGG CACTTTCCCT TCAGTCCCAG CAGCATGGTT 001520 001521 GATGTTCCCA AGTAATGGAG AGTCCCTGTG CTCTCAGTTG TGGCACACAC CTTTGCAAAT AGTGATCAGA TCTCCACAAA 001600 001601 CGCCTCTTGG GTAAGATATG CAGCAACATA GCTGGCTGCA GAGCAACCCA GTTCCCAAAT CCAGCAGCTC TTGGATGAGA 001680 001681 AGTCTGCAAG TGTTTACTGC TGGGACCAGG ACTGTGTTTC TAGGAAATGG TGCTAGGCTT CAGAGAGCAT CATCCACAGG 001760 001761 TCATCCCACA ACCATCCACA CAGAAGCCTG AGGAAAAGGG CTCTGCAGAG CTTGCACATA AAGATGCTGA ACTCAGGAAG 001840 001841 GCTCTGTGAG CTGCTGGTCT CTTCTGGTAG GGCAGCAGTG TCCTGAGAAG GTGGAGCTAG AGTATGGAGA ACAAAACTAA 001920 001921 CAAGCACCAA GGCAGCAAGC AAGGCAACCC CCAAATGACA GCAGTTGCCA AATCCAAAGC AATCTGTGCT TCAGAAGACA 002000 002001 GAGGCTCTGC ACAGTCCCTG TCTCAGACAT TGTCTCCTCC TTAGAAGATA CCTAACAAca gcactgtggg aggctgaggt 002080 002081 gggtggatca ccaggtcagg agatcaagac catccttgat ctttagtaga gacggtgaaa cactgtctct actaaaaaat 002160 002161 acaaaaaaaa attagctagc cgtggcggcg ggcacctgta gtctcaacta tttgggaggc tgaggcagga gaatggcctg 002240 002241 aacccgggag gcagagcttg cagtgagctg agattgcgcc actgcactcc agcctgggca acagagtgag actccatctc 002320 002321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaGA TACCTAACAA GCAGTACAAG AATATGAAGG ACCCCACTGC CCAGACTTTG 002400 002401 TATGGAGGGG TGTCTAAGGT GGCTACAGCA AAGCTGTCAT CTCCATCGAC CGGGACAGCA TCTCCAGCCA TGATGTGTGG 002480 002481 CCTGCTGGAA CAGCAGCCAT GTGTCCTTTC ACAGACAGCC CACCAAAGCT CTGACTGTGA AGGACATCCC AACATCAGCC 002560 002561 TAGCCTGCAT ACACTTAAGG CATAGAATCA CCTGAGGCTT CTCCGTTGAA GACAGGGACT CCCGATGGAG TTGCAGCCCC 002640 002641 AGCTTTGCAC TGTAAAGAGC CCCAGGGGGC TTCTGTGCTA GAGCAGGTGT GCAGACCCCT CCTCACCCCC TTCACTGAGA 002720 002721 GCTGCTGCCT GGAACCAGTG TTTTGACTGA GTCACCTCTG GACGTGGGCC CACAAGATCT GAGAGTGCCC AGACGAGAAG 002800 002801 TTGAATGCCT TGTGTTGACC TGAGTGTTTG GAAAAAAGCC CCAAACTTTG AAACAATTTT CATAATTTTG AGCTTCAGGA 002880 002881 TGTGGAATCA CTTCTCAAGT ATTCTGGAGT TCTGTCCATC AGAGCGGGTC CTGCCAATGC TGCCCTGTGC AGCGCTTCAG 002960 002961 GCTGCATCCC TCCCACTAGG GGGCGCCTTT CACATAGTGG CGCCTGCCTT CTAGAGGAGC AACATTTCCT GAACTGCAGG 003040 003041 GTTCCCTCGG GGCTTTGTGT AAAACACATC CACTGCATAG AATTTGTGTT ATTTCCATTT TGTTTTCTTG ACAATATTTA 003120 003121 ATTAATTACA AAATGATGTA TGTTATGATA GTTTAAGCAA TACAGAGAGT AACCAAACAA AAGCTTGGTC TTTTATTCTC 003200 003201 GCACTCTGAA TTTACAGTCC TGAAAACTCT AAACTCATCA TATAATCTAT ATTGTAAAGA CTTTGATAAt cccttccctt 003280 003281 gcctttcctt tccccattcc cccttcccct tccttcTTCT ACATTGTATG ATGTTTTTCA TATTTACATT CTAACCAATT 003360 003361 GTGTCATGTG ATACTAATTT GCAGAATAAA GCATGTTTTG CACATATTTC CAAGTCATAT AACATGCAGA CATACTTCAT 003440 003441 TTTGTAAATA TCTTCCTTCT CTTACTATAA GATTGAGAAT AGGTAAAGAG Caactctcca atgcaggtga tgagtgtgat 003520 003521 ttgcactatc actttggaca gccaattgga atatttattg aagtcataga tgcccagcaa ttctgttact ggatgtgtct 003600 003601 catagacaaa ctcttggaca tTCTTATAGA ACACTGAGCC CAAAGAAGAC ACATCATATA ATGTAAGAAG CTAGGACAGC 003680 003681 TTAAAAAAAA AAGGCCTAGA TCTGTGTAAT TGTGTGAGTG TTCTCGGACA TACTGTTTGT AAAAAATCGA GTTATTGAGT 003760 003761 AGTTTGATAA TATGATAATC ATGAAAATAA AGGATAAAGC AGCGAGTAA |
Predicted Small Protein
Name | NONHSAT015220_smProtein_1091:1357 |
Length | 89 |
Molecular weight | 10060.2806 |
Aromaticity | 0.0909090909091 |
Instability index | 63.8056818182 |
Isoelectric point | 6.26458740234 |
Runs | 9 |
Runs residual | 0.0290909090909 |
Runs probability | 0.0192839898722 |
Amino acid sequence | MMAQITVALWIKRKLSCDLEYPGDTENGPCRCRSALFPYPSASPPQYSERDKPEMGESQH ARPSPLCCVHGVHGERQQQEEQKGYFLY |
Secondary structure | LLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLEEEELLLLHHHHHHHHLLLELL |
PRMN | - |
PiMo | - |