NONHSAT015230
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT015230 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1582 nt |
Genomic location |
chr10-:81903200..81907928 |
Exon number |
2 |
Exons |
81903200..81904554,81907702..81907928 |
Genome context |
|
Sequence |
000001 agagacaagt cctggaattg gcattcccaa gaaccatttg gtgctttact gtcctgtggt tgagctggta tctaaggtgt 000080
000081 aagacaaagc ccactttact tttccctcca cttttctcta gcaggaatct tgccttgtaa ccaccacagc tgggaatgtg 000160 000161 ctggctgaat ctgaacctga aaccgacaag accgagtctc acccaaggcc ctcagcatag tacccagGAA CTACTGCGCG 000240 000241 CGGGACACAA GGATCAAGGA GAGAGCAGAG TGCAACCCCA ACCCTGCCTG ATCAGTGGGG ACGCCCGTCT TCCCTGCGAG 000320 000321 AGTTTTGGGG TGGAACAGGA GTGGCTGCTC AGGGGAAAAT TAAAGGAGCT GAGAAGCTCC AGTCGTGAGA AGGCTAATGA 000400 000401 AGGAGGCAGT TTCTCCGCGC AGGGGTTGTG CTGAGATGGC ATCTAGGGCC GGCTCTTCCA GAACCTCATT TGACACTGGG 000480 000481 CGGCAGCCAC CGGGTGTGGC AGGTGGGGCG GGGCGGGCGG GGAGCAGGGA TGATGCCGTC CCGCTTCCGT CCCCAGGGAG 000560 000561 CGCTGGGGCC CTCCCTGCCA GCCAGGCTAC ACCTGTGCAG TGGAGCAGCC GTCCCTGTCT CGCCTGCCCA GCGCCAGATG 000640 000641 ACAGCCGCCC AGAGGCTGTC CTCTGCCACC TGCACTGCTC ACCTCCGAGA AGGTCGGGAG CGGGGCTGAA GGGTCCCGGG 000720 000721 GGCAGGTTCC AGGCCAGCTC CTCCAGCAGG CCCAGCAGGC CTTTCACCTC TGTCCCCAGG TGATCCACGG TCTTCTCTAC 000800 000801 CATCTAGAGT GGGAAGTGGG GTAAAGTCGA GGACAGAAGT GGTTCCACGT TCCGCTTCAT CAGCTAGGTC CTAAGAGAGC 000880 000881 AGCTGGCGGT CCAGTGCGGT GCAGTGGGAA AGGACTGGGC GCTAAGTGAC CTGGGTTTTC CTCACTCAGG CTCTGCCCCT 000960 000961 ACCTGCCTCA GTTTCCCCAG ATGACAATAT CCTAGGGGGC TTGCTCTCTA AGGCTCCTTC TTTTTTGGCA CTTAGTCACA 001040 001041 GATTTGGATG AAGCGCCTGT AGAATACCTT CTCCCTTTTG GACTTTGCAG CCTGGAGCTC ACATTCCTTT TGTTGTTCCG 001120 001121 CCCCCTGGTG GTATCTCTGC CAAATGACAG GTTTGGGATT CTGAAATTTA CTGAGTTCTT AATggttttt ccctgtgtat 001200 001201 gccatggacc ccattggcag tgtggtgaag cctacagacc tcttctcaga ataatgcctt aaatgcaaaa aataaaacat 001280 001281 atagaattac taagggcacc aattgcatta aaatattatt caagtattag gccgggcgtg gtggctcacg cctgtaatcc 001360 001361 cagcactttg ggaggccaag gggggcagat catcggaggt caggagttca agatcagcct agccaacgtg gcgaaaccct 001440 001441 gtctctacta aaaatacaaa aagaagccgg gcatggtggt gcgcgtctgt agtctcagct actcgggagg ctgaggcaag 001520 001521 agaatcactt gaaccgggag gtggaggttg cagtgagccg agatcacacc attgcactcc ag |
Predicted Small Protein
Name | NONHSAT015230_smProtein_155:433 |
Length | 93 |
Molecular weight | 10204.4361 |
Aromaticity | 0.0434782608696 |
Instability index | 54.5434782609 |
Isoelectric point | 8.46173095703 |
Runs | 13 |
Runs residual | 0.00609946825149 |
Runs probability | 0.0456836927426 |
Amino acid sequence | MCWLNLNLKPTRPSLTQGPQHSTQELLRAGHKDQGESRVQPQPCLISGDARLPCESFGVE QEWLLRGKLKELRSSSREKANEGGSFSAQGLC |
Secondary structure | LEEELLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLLLEEEELLLLLLLLLLLHH HHHHHHLLHHHHLLLHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |