NONHSAT016640
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT016640 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2972 nt |
Genomic location |
chr10+:121356543..121359514 |
Exon number |
1 |
Exons |
121356543..121359514 |
Genome context |
|
Sequence |
000001 GAGACTTCTG GGTAGTGTAG TCATACGTGA GGACGTGCGA CGACCAGGAA GTCGGCGGGC TGGGAGGTAA AGGGAAGAAT 000080
000081 AAAAGCGACA TTGAAAGGCG GGGAGACCAA GTGGGGAAAA GCGCTGTCTG GGAAAGCGAA CTACAAGTCC CAGAGTTCCT 000160 000161 CGCGCCGGGG GCTGTCCTCG GACTGCTCCA GGCATTGTAA GGCTCTTCTG TTGGCCCAGT CTGAGCTGCT GCTCCGCCTT 000240 000241 CGTCCAGCCC GAGAGCGGTT TCTTCAACTG TGGCTCAGGC AGCACTCTCC CTCCGCGTGG TGTCCGAGCC AGCAGGGCCG 000320 000321 TCCGGCCCTC CTGTGTTCAT CAGAACGGCT GGCTCGCGTT AGTCAACCGC CGCTTCGCGC GACAGTCAGA AGAGAGGCTG 000400 000401 TGCTGGCGGG GACCCGGAGG GGTTGGGGTG TTTTGGGGAC TCGATTTCCC ACAAATAGGT ATTTCTAGCC TATTTGTTAA 000480 000481 ATACAAGTAG GTGGCCTGCT TGTAAATTGC TTTACAAGTT TCAGAGGTTT CCCTATCAAA TGTCTCATCG GATAGTGGGG 000560 000561 TAAGAAGAGG AGCCCTATTA TAATGACTTG CCCAACTCCC CCCGTATTCT TGGAGTTAAA AGAAAAAAAA ATCCTTGGGC 000640 000641 AGAGACGTGC ACAAACATAA AGTTGCGTTT ACAGACATCA GTCATGTGGG CTAGAAACGC AGTTTTGCAT GAAGATAGGG 000720 000721 GAAGCCATGT TCATACTAGC TCTGCATCCC TGTAGAATTT GTCTTCTCAC CCCCCACAAC AGTTCCTGGT GTGCTTTTTT 000800 000801 CCTCCTCTAA GTACCTTCAG GAGAAAGTAC TTGGTCTTGT AGCTTAGTGA AGAGTGGCGA TGAAGAAAGA TCTTTCAGCC 000880 000881 CATTGCCAGA ACTTAACTGC CCCGGTTAGT AATGGCTTAA GAGTTGCTTC TGCCGACATG TACTAAGTGC ATGTCGACCT 000960 000961 CTGCAAGTGG CGGTGCGTAT GCGTGCCACT GAACATTAAT CTTGAAAGCA GAATCAACCA TGCAGCAAGC CCTTATGTTG 001040 001041 TCCATTTTCA GGGGAGGAAA TTTCAACCTG AAAGACTTCA TAGAGACACG GCAAAGGAGT TGAGCCCCAT AAGAGTCCGT 001120 001121 AGGAACAACA AAAGGCTCAG ACGCCAGGAC CCATGGCTAA AATGTATGGG CTGGGGATGC GGGCGGGAGC GGGGGGAAGG 001200 001201 GAACTAAAGC TAGAGAGGAC CTTGTAGAAC CGTGTTGTCA AGAATCTATT TCATGCTGAG GAATTTGAGC TTTCTCTTCC 001280 001281 AGGCAGTGAG GAGCCACTCA AAGGTTTTGT CTATGTTTTT AATTGGACCT AGGTGTAGAA CTGGATTTAA TTATAATCCA 001360 001361 ATTCATTAAC CCATGCCTGG CCCGCtgtga tagtttcctg ttgatgctgt aacaaattac tgcaaattta gatacttaaa 001440 001441 acaacacgaa tttattttct tacaattctg gaagtcagaa gtccaaaatc agttacactg ggctaaaatc aaggtgtcgg 001520 001521 cagggctggt tccttgcctt ttccagcttc tagaggctgc ctgcattcct tggctcttgg ccccatcctc catcttcaag 001600 001601 aaaagaagca tagtatcttc tttcttctct gcctctgtac gtacatcgtg attctcctgc cacccctttt catttacgag 001680 001681 aaccttttgt gattactttg ggcgaagatt atctcaagat tcttaatcac atctgcaaag tcccttttag cataacattc 001760 001761 ccaaattctg ggaattagga catagaaatc tttggtggac cattattcag tttaccgcaC CCACCTTTAT TACTTTAGTT 001840 001841 TTGATTATAG ccacaaaccc accacactaa aaagttataa tgacacgagt ttatatctgt atctatgcta tacctcctac 001920 001921 acacaataac acacacccct gccttcgctt ggggtaacca tctttctgaa tcctgtcttt actatttatt gctttccttc 002000 002001 tacaaggttt tattccacat gtacatagtc ctaaaaatca tatgtatata catgtatatt tgagtttttt tttaacttag 002080 002081 taaaaagaat atGCCCACTA CAAACTAGAA TGGTTAAAAT GGGCATGTTT ACTGGCAGTG AAATtattaa ggttaaaatc 002160 002161 caaaacacta acaccaccaa gtgctggtga gtatgaaaag caacaggaac tatcattctt tgctggtagg actgcaaaat 002240 002241 gttatagccc ctttggagga cagcttgtca gttccttaca aaactaaaca taatgcctag gtacttaccc aaatgagctg 002320 002321 aaaacatgtt tacataaaaa cctgcacaca aatgtttaca gcagctttgt tcataatcat cccaaattgg aagcaactaa 002400 002401 gatgtccttg atataagtga atggataaac tgtcgtacaa ggtggtacat ccatgcaaag aaatattgtt cagtgatttt 002480 002481 tttaaaaaga gctattgata tggtttggct ctgtatcccc acccaatctg atcttgaatt gtactcccat aattcccacg 002560 002561 tgttgtggga gggacctggt gggagataat ttgaatcctg ggggcagttt cccccagact gttcttgtgg tagtgaataa 002640 002641 gtctcacgag atctgatggt tttatcaggg gtttccgctt ttgcatcatc ctcattttct cttgctgcca ccatgattct 002720 002721 gaggccttcc cagccatgtg gaactctaag tccaattaaa cctctttttc ttcccagtct ggggtatgtc tttatcagca 002800 002801 gtgtgaaaac agactaatac agctctcaag ctacaaaaag acatggagga atgttaaatg tacagcacca agagaagccc 002880 002881 agtggaaaag gctgtaaacg ctacaacttt aactatatga cactctggaa agggcaaaac tcagtggttc cctgggcatc 002960 002961 agggaaggag ag |
Predicted Small Protein
Name | NONHSAT016640_smProtein_1904:2062 |
Length | 53 |
Molecular weight | 6305.6007 |
Aromaticity | 0.211538461538 |
Instability index | 44.0348076923 |
Isoelectric point | 7.82745361328 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.0307586998763 |
Amino acid sequence | MLYLLHTITHTPAFAWGNHLSESCLYYLLLSFYKVLFHMYIVLKIICIYMYI |
Secondary structure | LHHHHHHHLLLHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiii |