NONHSAT017278
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017278 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2923 nt |
Genomic location |
chr11-:565535..568457 |
Exon number |
1 |
Exons |
565535..568457 |
Genome context |
|
Sequence |
000001 cgcggggccc ggggccggtc gggtcgggcc ggggggcgAG AGGGTGCCAG CGGCCGCAGC TGAAGTTGGG CCGAGAGCCG 000080
000081 GCGACGGCCC CGCGCCGGGG TCGCAGGTGA CGCGCGAGGG ATCCCAGGTT GGCGGGCGGG GCGCCCCTCA GAGGCCGCCC 000160 000161 TCCCGCGGGG GCTGCGGGGG GTCGGGCTGG GCAGGCGCGG CGGGGCTCGG ACGCCCAAGT TGGAGGGGAC GGGGGTGGGG 000240 000241 TCAATCCCTC CGCCCGCCCA CCCGGCAGTG CCTCCAGGCG CAGGGCAGCC CCTGCCCACC GCACACTGCG CTGCCCCAGA 000320 000321 CCCACTGTGC GTGTGACAGC GGCTGATCTG TGCCTGGGCA GCGCGACCCT CCTGGCCCCG TGTCCGGGTC TGGCGGGCAG 000400 000401 GCGAGCGGCC ACACGGGGAC GCGAGGGCAG CTGGATACCG TGGGGAGGGG GTGCCCTATG GACGGGGTGT GCCTGTCTGG 000480 000481 CCAGCAGGGA CGGCGGGTGG GGGTAAGCGA AATCATTCGG GGGCTTTGCT GCCCTCCGCT TGGTGGGGCT GAGGCTGGGC 000560 000561 CAGATACCCT CTTGGAGGGA ACTTTCTTTT CCTTGTGTGT CCAGGGTACC AGTGTGCGGA GTTCCTGTTG CCAAGCTGAA 000640 000641 GGTGGCCCTG GGCAGGCACA GGTGTGGTCA TATCTTCAGC CAACAGGACC ATCCTCCGGA GGGCCACCTC TGGGGACTTC 000720 000721 CTACGGGAAG AGAGTGACAG ATTTGGTGCT TCTGTGTGTT TCTGCCGCTT CAGTGGGGCC GCTGCGGGAG ACAGCGGGTG 000800 000801 GATCCTCCAG CAGCCTGTCT GCTGAGCCTG CCTTCTCAAG TCTACTGTTA AAATCAGGAC CGGGTCGTGT CCGAGCCTAC 000880 000881 AGGCCCTGTC TCCGCTCCCC AGGCCTGCAG GAGTTGAGGG CTGCACCTGC TCGCTGGAGA GGGAGAGGCA GATTTAGTGG 000960 000961 ACGCCTGGCA TGGACTCGGA CTGGCCTTTG GAAGCTCCCT GCCCTGACGG GGTTGCCTGT CACCACTGCG AAGTGAGGCT 001040 001041 TGGCAGGACC TGCACCTGAG AAAGGCTGTG TGTGGTCTTG GGGTCCACAC CTGCAGAGCT AACTTACTGC CAGACGGCGA 001120 001121 CTTACTGTGG GCCACCCTCA GTGAACCGGG GTGTCCTCAG CTGGCCCTAC AGAGCACTTC TGTGCTGGGG ATGAGTAGGA 001200 001201 ACTCTGGGCG AGGAGGGTCC CAGCGCCGCC CCTCGATACA GCCTGGCTCT GCCCTCTGCC CGTACTTACA CCAGGTGGGA 001280 001281 TCCCTGCCCT GCATTGCCTG GGGATTGGCT GGGCTTGGGC CCGCCCTGCT GTGGAACTGG ATGTTTTCAG GGAGCCCAGC 001360 001361 CTTTCCTCAT GTCAACACAG TTCACAATAT AGTTTTCAAA GTACAGTTTA AAACTCAAAA GTAAACTTTT CAGCAACTCA 001440 001441 AAGGTTTGCT GAGTGATCTG AAGCACTCTG GCCACTTTTT GGGGCCATGG GATTTGGTTC ACCTGAAACA GCCAGTGAGA 001520 001521 ggccgggtgt ggtggctcac acccgtaatc ccaacacttc aggaggcaga cgcgggtgat cgctcacttg agatcaggag 001600 001601 ttcaagacca gcctgggcaa catggtgaaa cctcgtctct actaaaaata caaaaattag ctaggcatgg tggtgggcac 001680 001681 ctgtaatccc agctacttgg aaggctgagg caagagaatc gcttgaacct gggaggtgga ggttgcagcg agacgagatt 001760 001761 acgccgctgc actccagcct gggtgacgag agactctgcc tcaaaaaaat aaaaaaatga aaCAGCCAGT GAGGAGGAAG 001840 001841 GCTCCCCGCC TTCCCCCCGC CGGAACATAG CCATAGCTGC TGCTGGGACA CCCTCTTGGT GGGGAAGAAG GCTGGTTAGC 001920 001921 TTCATCAGAG CCAGCAGCAG CAGACCAGGG ACGGGCACCT AGGCAGTGGC CTCAGAGTGA ACAGGAGTTC CTCAGAAACA 002000 002001 CACACAGGGA CGGCGTGGCG CATGCTCTGC CAGCTCCATG CCTCCTTCCC ATTGTGGGGC TGGGGTACGT AGGGCAGAGC 002080 002081 TCATGACCTC CGGGAGGACA TGGGGGTGGG CTCTGGATGG CACCTGGCAT TGCCCCCTGC TGGCCTATGT GACGGTGTGG 002160 002161 AGGGCTGGTC ACAGAGGTAC GACCATCCCT CCAGAATGTG GGTCGGGGCT GTGGATGGAG GAGTAGGCCC CTCATATCCC 002240 002241 AGGCCTGCTG CCCAGGCACA ACCCACTTGG CCTATGCATT CCAGGCTCCA TCCCATGTGA CTCTGGGCTT AGCCCCTTCT 002320 002321 GGGGCCACAG GTCAGGCAGG TCCAGGCCCC AAGGACCTCC CAGTGACAGG CGACTGTGAG CTGGGCAGAC AGGAGTGAAG 002400 002401 TCAGGTGGGG GTTCTGGCTT GCTGACACCA GCGTTTGGAG CCTCCTGCTG CTGCCTGGCT TCCCTGCATT CCCTGTTCCC 002480 002481 TGCCTCAGGC AAGAAATAAC CAAGCCGAGT TGCCTCTGCA CAGCAGTGAG CTCCTGGTGG CCCTGGCTTC TGGGGAGCCC 002560 002561 TGTGGATGGC TTCCTTGCCC AAGTCCAGGC CTTCTTGTTC CCTTTGTGTG CTCCAGAGAA AGGGGGCAGC ACCAGATCCA 002640 002641 GATCCAGGGC CAACCAACAG AAAGCTGAGT CCATCCCAAA CTCGCCCATT CTCAGAGCAC AAAGACCCCA TGATCTAGGG 002720 002721 caaacttgtc caactgttgg cccatggaac agctttgaat gcagcccaac acaaatctat aaattttctt aaacattgtg 002800 002801 agttgttttt tgttgttatt ttgagacaga gtctcgatct gtcgcccagg ctggagttag tggcccaatc tcggctcact 002880 002881 gcaagctccg cctcctgggt tcacgctcgt ctcctgcctc agc |
Predicted Small Protein
Name | NONHSAT017278_smProtein_1190:1423 |
Length | 78 |
Molecular weight | 8389.64 |
Aromaticity | 0.103896103896 |
Instability index | 57.4480519481 |
Isoelectric point | 11.0127563477 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0619630325512 |
Amino acid sequence | MSRNSGRGGSQRRPSIQPGSALCPYLHQVGSLPCIAWGLAGLGPALLWNWMFSGSPAFPH VNTVHNIVFKVQFKTQK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLHHHHHLLLHHHHHHHHHLLLHHHHHHHHHLLLLLLLL LLEEELEEEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHH HHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTT TTTTTTTTTTTTiiiii |