NONHSAT017279
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017279 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2303 nt |
Genomic location |
chr11-:565657..568457 |
Exon number |
2 |
Exons |
565657..567853,568352..568457 |
Genome context |
|
Sequence |
000001 CGCGGGGCCC GGGGCCGGTC GGGTCGGGCC GGGGGGCGAG AGGGTGCCAG CGGCCGCAGC TGAAGTTGGG CCGAGAGCCG 000080
000081 GCGACGGCCC CGCGCCGGGG TCGCAGGGTA CCAGTGTGCG GAGTTCCTGT TGCCAAGCTG AAGGTGGCCC TGGGCAGGCA 000160 000161 CAGGTGTGGT CATATCTTCA GCCAACAGGA CCATCCTCCG GAGGGCCACC TCTGGGGACT TCCTACGGGA AGAGAGTGAC 000240 000241 AGATTTGGTG CTTCTGTGTG TTTCTGCCGC TTCAGTGGGG CCGCTGCGGG AGACAGCGGG TGGATCCTCC AGCAGCCTGT 000320 000321 CTGCTGAGCC TGCCTTCTCA AGTCTACTGT TAAAATCAGG ACCGGGTCGT GTCCGAGCCT ACAGGCCCTG TCTCCGCTCC 000400 000401 CCAGGCCTGC AGGAGTTGAG GGCTGCACCT GCTCGCTGGA GAGGGAGAGG CAGATTTAGT GGACGCCTGG CATGGACTCG 000480 000481 GACTGGCCTT TGGAAGCTCC CTGCCCTGAC GGGGTTGCCT GTCACCACTG CGAAGTGAGG CTTGGCAGGA CCTGCACCTG 000560 000561 AGAAAGGCTG TGTGTGGTCT TGGGGTCCAC ACCTGCAGAG CTAACTTACT GCCAGACGGC GACTTACTGT GGGCCACCCT 000640 000641 CAGTGAACCG GGGTGTCCTC AGCTGGCCCT ACAGAGCACT TCTGTGCTGG GGATGAGTAG GAACTCTGGG CGAGGAGGGT 000720 000721 CCCAGCGCCG CCCCTCGATA CAGCCTGGCT CTGCCCTCTG CCCGTACTTA CACCAGGTGG GATCCCTGCC CTGCATTGCC 000800 000801 TGGGGATTGG CTGGGCTTGG GCCCGCCCTG CTGTGGAACT GGATGTTTTC AGGGAGCCCA GCCTTTCCTC ATGTCAACAC 000880 000881 AGTTCACAAT ATAGTTTTCA AAGTACAGTT TAAAACTCAA AAGTAAACTT TTCAGCAACT CAAAGGTTTG CTGAGTGATC 000960 000961 TGAAGCACTC TGGCCACTTT TTGGGGCCAT GGGATTTGGT TCACCTGAAA CAGCCAGTGA GAGGCCGGGT GTGGTGGCTC 001040 001041 ACACCCGTAA TCCCAACACT TCAGGAGGCA GACGCGGGTG ATCGCTCACT TGAGATCAGG AGTTCAAGAC CAGCCTGGGC 001120 001121 AACATGGTGA AACCTCGTCT CTACTAAAAA TACAAAAATT AGCTAGGCAT GGTGGTGGGC ACCTGTAATC CCAGCTACTT 001200 001201 GGAAGGCTGA GGCAAGAGAA TCGCTTGAAC CTGGGAGGTG GAGGTTGCAG CGAGACGAGA TTACGCCGCT GCACTCCAGC 001280 001281 CTGGGTGACG AGAGACTCTG CCTCAAAAAA ATAAAAAAAT GAAACAGCCA GTGAGGAGGA AGGCTCCCCG CCTTCCCCCC 001360 001361 GCCGGAACAT AGCCATAGCT GCTGCTGGGA CACCCTCTTG GTGGGGAAGA AGGCTGGTTA GCTTCATCAG AGCCAGCAGC 001440 001441 AGCAGACCAG GGACGGGCAC CTAGGCAGTG GCCTCAGAGT GAACAGGAGT TCCTCAGAAA CACACACAGG GACGGCGTGG 001520 001521 CGCATGCTCT GCCAGCTCCA TGCCTCCTTC CCATTGTGGG GCTGGGGTAC GTAGGGCAGA GCTCATGACC TCCGGGAGGA 001600 001601 CATGGGGGTG GGCTCTGGAT GGCACCTGGC ATTGCCCCCT GCTGGCCTAT GTGACGGTGT GGAGGGCTGG TCACAGAGGT 001680 001681 ACGACCATCC CTCCAGAATG TGGGTCGGGG CTGTGGATGG AGGAGTAGGC CCCTCATATC CCAGGCCTGC TGCCCAGGCA 001760 001761 CAACCCACTT GGCCTATGCA TTCCAGGCTC CATCCCATGT GACTCTGGGC TTAGCCCCTT CTGGGGCCAC AGGTCAGGCA 001840 001841 GGTCCAGGCC CCAAGGACCT CCCAGTGACA GGCGACTGTG AGCTGGGCAG ACAGGAGTGA AGTCAGGTGG GGGTTCTGGC 001920 001921 TTGCTGACAC CAGCGTTTGG AGCCTCCTGC TGCTGCCTGG CTTCCCTGCA TTCCCTGTTC CCTGCCTCAG GCAAGAAATA 002000 002001 ACCAAGCCGA GTTGCCTCTG CACAGCAGTG AGCTCCTGGT GGCCCTGGCT TCTGGGGAGC CCTGTGGATG GCTTCCTTGC 002080 002081 CCAAGTCCAG GCCTTCTTGT TCCCTTTGTG TGCTCCAGAG AAAGGGGGCA GCACCAGATC CAGATCCAGG GCCAACCAAC 002160 002161 AGAAAGCTGA GTCCATCCCA AACTCGCCCA TTCTCAGAGC ACAAAGACCC CATGATCTAG GGCAAACTTG TCCAACTGTT 002240 002241 GGCCCATGGA ACAGCTTTGA ATGCAGCCCA ACACAAATCT ATAAATTTTC TTAAACATTG TGA |
Predicted Small Protein
Name | NONHSAT017279_smProtein_692:925 |
Length | 78 |
Molecular weight | 8389.64 |
Aromaticity | 0.103896103896 |
Instability index | 57.4480519481 |
Isoelectric point | 11.0127563477 |
Runs | 11 |
Runs residual | 0.00677583286279 |
Runs probability | 0.0619630325512 |
Amino acid sequence | MSRNSGRGGSQRRPSIQPGSALCPYLHQVGSLPCIAWGLAGLGPALLWNWMFSGSPAFPH VNTVHNIVFKVQFKTQK |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLHHHHHLLLHHHHHHHHHLLLHHHHHHHHHLLLLLLLL LLEEELEEEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHH HHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTT TTTTTTTTTTTTiiiii |