NONHSAT017539
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017539 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2294 nt |
Genomic location |
chr11-:2965668..2973999 |
Exon number |
4 |
Exons |
2965668..2966876,2970457..2970494,2972489..2972545,2973010..2973999 |
Genome context |
|
Sequence |
000001 TGGAATAGGC CCTGGAGCCT GCTGGAGGCT CGTTGGATCT GACGTGAAAT GGAAGAATAT TGAGAAGCCT TTCCCTGCCT 000080
000081 GATGCCAGTT AGGGTCCTTA GAGCGGAAGG GCGCTGCACC GTGGCCACAT CTCATCCTGG CTGCTGCGTG GCGCCAGGAG 000160 000161 GCTGTGCACA CTGTGTGAAC TCCACACCAG CACAGTAGGG CCCTTCTAAG TTCCACCGAA GTTGGCTCTA AGCAAATACA 000240 000241 TGGTGTGAGC TCAACAAAAT GGGAAATGTT GATAAATGAA GCTGCATTTT CATGCACTAC CCTTGTTATG CAACCAGTAG 000320 000321 TGATAAGGTG GTTTTGCTTT TGGTGTAAGT CTCATGTTTG AAACTTGATT TTTAGTCTGA CCAATGATGT ATTTGGATGT 000400 000401 AGGAGAAACT GATTCAAGAC AATTGACTAA TGGTGGAGGT TCACCTTTGA GCACCTTATT GATCACTTTA AAGATTAAAC 000480 000481 ACCAAAGTTT TAATATATTT CTACTAAGGT TTCTTTTCCC TTTGTATGAG ATGTAAAATG ATACCCAGAT TCCTGTATCC 000560 000561 AATAACATTA TGCTGCTGGT TCGATCAGCC TTGTAGAAAA TTTAAGGAAA ACAAATTCAT CGGTTTACAA AAATCTTTTC 000640 000641 CTGTGTGCCT GCTCCTCGGT GTGAGAACAG CCAGGGCAGA GCTGTGGTGC CAGGTTCCCA GCTGTGTCCA GGGTACACCC 000720 000721 TGGCTGACCA GCTTCCTATC CTATTCCTTG TTTTGCGTGA CTTTCAATTT CCTGGCATGC TTTTAAAATG CGCTGCACAC 000800 000801 AAGCAAATGG CTCCTCAGGC AAGCGAGGCC CAGCAGGCAG CGTGGCTGGA CTTTCTGCTC CTCTTAGGCT TGGTCAGTGA 000880 000881 GTCACTTGAT GGGACTGGTG TCTTGGGCAG GCTGCTGTCA TGTTTTGTAA ACCTAAAAAT GTTTTTCTGT GTTTCTCCAG 000960 000961 TTTGAAGAAG GTGAAGAAGG AGAAGAGGAG GAATTAGAAG GTGACGAGGA GGGAGAAGAC GAGGATGATG CGGAAATTAA 001040 001041 CCCCAAGGTG TAATTTTTGT CTGTTAATCA TTCATACGTT TCTAGAAGGA ACCCAGCCAG CCGGCGGAAT GCAAGCAGCA 001120 001121 GTAGGAAGCG GAGGCGGGTG CCTGGCAGAC CGGCTGTCGG GACTCCAGGC CTGTGGGCGG GGCCTCGGTC CTTGCCGCAG 001200 001201 CACAATCCCG TGGACAGAGC TTACTCCATC TAACTCGTTT TCAAGTGCAT GATTTTCACT TTCACTTTTC CTTTTTCCTT 001280 001281 ATTATTTTGC TTAACTTGTA CAGTGGCAAC TGAAATGCAT TTCAGAAATA GGAGGTTTCG TCCAGCACCC TCTGCAGCCT 001360 001361 TGGTGCCTGT AGCTCTGGAC TTCCCTGGGC CTTTCCCTGT GGGAGGGCCC TGTAGACCAC ATCAGGGTGG GGTGGGGGTC 001440 001441 ACTTGGCAAA AAGGGCCGAG GTCTGGTGAT GTGGTTCCCA GGATCTGGAA CCTCTCCCAC CCCTCCTGCA GTTGGACTGA 001520 001521 ATTCTTCCCT TTCATCCGAA GAAACCCACT TGCTGTTTCC AGCCGCTGAA TCTGCTGAGT GTGCAGCCTG CATCACCTGC 001600 001601 TGTATGCCGA TCATCTCAGA AAGGGCTGTG TAGAGTAGGG CCCTGTTCTC CTTAGGATGT TGCTTCTTGA TTTTTTTTTT 001680 001681 TTTTTAGGGG TGGGTCAGGG TTGTGACACA CCAGCCCAGG TGAGAGCTGC TGCGGGTCAC CTCATATTTA TTTATCCCTT 001760 001761 CTTGCCTGTG AGGACTGCGG CTTTTCGCTG TGGCTCGTCC TTAACGTTTC TGAACCACCT TGGTGCCCTG AGCAGGAAGA 001840 001841 TGTGCCACTT CCTAGCAGGC GCAAGGCCTG TGCGGAAGAA ACGCCGCTCC CTGCCACCAG GGCTGAAGAT GCGAGCCCGT 001920 001921 CCTCATGACG CAGGCGCCAC CCTGCTGCCG GAGCCGGGCT TCGGCAGTCT TCTCCACTGA GGGACTGGGC TGGGAAGTCC 002000 002001 TGCGTTTCAG TGGAGCGTAT GAGCGTCAAG TCCTGCTTTC TCAGTAGCCC CATTGCGGGG CCCCACCATT CATCCTGTCT 002080 002081 GAAGGTCCTG GGTTTGGTGT GACCGCTTGG CGGCTGGTGG GTGGGGTTTT CAAGTGGGTG ACGGCGCTCT CCGGCAGCCG 002160 002161 GGGATGGCCG TGTCCGCACT GACCAGGCCT GTGGAGAGTG CTCGGCCTAA CCTTAGAACA CATTTGTAAC TGAATACAGT 002240 002241 GTTTTCAATT TGTACAGAAT AGTTAGAATA TTCTATTAAA GTGGTGAAAC ATTG |
Predicted Small Protein
Name | NONHSAT017539_smProtein_776:964 |
Length | 63 |
Molecular weight | 6711.9763 |
Aromaticity | 0.0806451612903 |
Instability index | 51.5209677419 |
Isoelectric point | 6.50787353516 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0283518812931 |
Amino acid sequence | MLLKCAAHKQMAPQASEAQQAAWLDFLLLLGLVSESLDGTGVLGRLLSCFVNLKMFFCVS PV |
Secondary structure | LHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLLEEEEEE LL |
PRMN | - |
PiMo | - |