NONHSAT017688
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017688 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
779 nt |
Genomic location |
chr11-:5717300..5718052 |
Exon number |
1 |
Exons |
5717300..5718052 |
Genome context |
|
Sequence |
000001 GGCACGAGGC AGTGTCCTTC AGGCATCAGA AACTAAGCAA AGAGTATGGA AAGAGATCAC AGGGCTCTCC GTTCTATGGT 000080
000081 GACAAGGGGA ATAAAGCAGG ACAAAAAAAG TGGAGATTTC ACATTAGGTA CCATCTTCTG CTCTCTGCTC TCTCTTCCTC 000160 000161 TATCTTGGAG CCTACCTGAC ATTCCTTGAC CACCTCGTTT ATGCGGAATG TTTGGTGACC TTGGTGTTCC TGAGACAGTT 000240 000241 CACAAACCCA GCAAATGACT TTTCCATCCT CCTTACAGAA GATCTGGAGT TTTTTTCCGT GGTGCTCACA GACATCTCTC 000320 000321 TTCTGCCCCT CCTGTGGGCT CATCTTGACC TCTTTGACTC TCTCAACTAT GTTGGCCAGA TGCCGATTAG GTCGGAGGTT 000400 000401 CCCAGGCTGG AATCTGGTCT GACACACAGG ACAGCTGCTT TCCCCTCTTG AGATGATCAC TGACTCCTTG ATCTTTGCAG 000480 000481 TGATGCAGGC TTGGCAGAAG CTGTGGCCAC AATCTAGGCT CAGAGGTTCT GTCAGGAGCT CCAGGCAGAT GGGGCAGGTC 000560 000561 ACCTCCTTCT CTATGTCTAC CTTTACTGAG AAATCCATTG CACTGCTCCC TTGGCTTCCT TCTGTCTTGA CTCTTGAAGT 000640 000641 TCTTGGTCAC AAACTCCTGC AGTGCTGAGA ATGTTGAAGG GGACAGGGTA AGAAAAGAAG GAATAGAAAG AATACTGCTT 000720 000721 TTACAGAGAT TTAGAACAGG ACAAAACATT AATATTTAAC AAAAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT017688_smProtein_452:667 |
Length | 72 |
Molecular weight | 8066.47 |
Aromaticity | 0.0845070422535 |
Instability index | 64.6281690141 |
Isoelectric point | 10.2844848633 |
Runs | 14 |
Runs residual | 0.048628613788 |
Runs probability | 0.0393544805309 |
Amino acid sequence | MITDSLIFAVMQAWQKLWPQSRLRGSVRSSRQMGQVTSFSMSTFTEKSIALLPWLPSVLT LEVLGHKLLQC |
Secondary structure | LLLHHHHHHHHHHHHHHLLLLLLEEEEEELLLLLLEEEELLLHHHHHHHHHLLLLLLLEE EHHHLLHHHLL |
PRMN | - |
PiMo | - |