NONHSAT017908
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017908 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2843 nt |
Genomic location |
chr11+:9081856..9088694 |
Exon number |
2 |
Exons |
9081856..9082082,9086079..9088694 |
Genome context |
|
Sequence |
000001 GGGGTATGGA GGGTATGTTG CCTTTATCCC CATATGTTAG CGGCATGGGC CCTCCCTCCA TAACAGGGCA CCCAGTCTCC 000080
000081 CTGGGGAGGT GAAGGCTACC TTTACATGTC TTCCCATCCA ACTGGAGAGT GAATCCAACA GGACAACTGC AGTGGACACC 000160 000161 TGTCGAAGTA TCCTTACAGG TGCGGTCACA GCCTCCATTG TTGACAGCAC ACGTTTCTGG CAAGGAGaaa tatgggggag 000240 000241 gaggagccag aagaagaaac agctcgaaga attgactatt gttgcctctg gcaaatggga tgaggaaatg ggaagttatg 000320 000321 agacaaggaa atgatgagtt tcattacaag cctagaagta ATTAAGCGTT TATGTTACTC ATTTGTACTA TTTTCACTTA 000400 000401 AGACAATGAA AATTTATAAT TTCTAAAGAG CAGAAAAGAG CTCGGAAAGG TTACCTGCTT GGTAACCAAT GGCTGTATGA 000480 000481 TATGTTGCCT GACTGTTAAA TCCAGAAACT GTCAAAAGAT GGGTTTTGTT TAGGTTGAGC CAGACTTTCT CCAGAAGGAG 000560 000561 TAACGCACCA AAGGATCTGT CTGACTCCCA CCCCCATGAC CACCTCTATT TCTGCTCATC TCCAGCTTGA CCGCTGGACC 000640 000641 TTCAGGCAGG TCTTCCCTTG TCCCACAGCC AAGTGTTGCC CCTCTCCATT CATCTCTTCT ACTATTATCA TCAGCTGAGT 000720 000721 CAGAAATAGA AGACTCAGTG GACACAAAAA AAGACTAGCT GCCATTCTGA GCTAGAGGCT GCTTCAGAGG AAGACAGCTG 000800 000801 ACttcactga ccacccactc agtcccaggc actggactct gggcaccttt ccatattatt atcttaattg agcatcccaa 000880 000881 ctgatatggc caggctttat gtccccactc aaatctcatc ctgaattata atccccataa tcccctcgtg tcaagggaga 000960 000961 gaccaggtgg aggtgattgg attatggggg cggttcccat gctgttctca tgatagagtg agatcatgag atctcatggt 001040 001041 tttacaagtg tttggtagtt cctcctgcat ttattctcct tcctgccacc ttgtgaagaa ggtaccttgc ttcccctttg 001120 001121 ccttccacca tgattataag tttcctgagg cctccccagc catgtggaac tgtgagtcaa ttaagcctct ttctttatca 001200 001201 attacccagt ctcaggcagt tctttacagc agtatgaaaa tgggcgaata ccctggccct aagaggtaga ctttattaca 001280 001281 tccatttcaa agaaagacca agagacagag cctcagggca gtttgccaag tcttacagct aggtgggggc tgcattggga 001360 001361 cgttaacctg attattctgA TGGACACGAG ACCAAGGGTC TTGCTTGGTT GGTGATTAAG CAACAGCACT GGTGAAGAAC 001440 001441 AGACACACAC CCTGGTTCAC AGGAGCTGCT CACCCCAGTC CAGCTGGTCT GAGGGCATGT GGCTCCCAAG TTCAGGTCTG 001520 001521 ATGCAATAAG TTGGGGAGGG AAAAGGACAA TTGCAGTGGC CAAGGAAAGG GAGTGAAGGT GCCTACCCAT GAGCAGCCGC 001600 001601 CGTTTCACCC GTTTATCCCC ATCCACCACT GATGTGGTGT TGCTCTCTGT CACCTCCAGG ACAGTGTCCT CTCGCTCTAC 001680 001681 AAGAGAAGCA AAAGAGCACG GTTCTCAGAC TGAATGAGTT AGATTGCTCA TCCCCATACA ACTGTGTTTG CTGAAATCCC 001760 001761 AGACATAAGA GGAATGAAAG ATATGTGACT CTGTTCACGC AATAAAAATG TGTTGTAATG AGGCTCTGTG GGAGACACAG 001840 001841 CCCGTTAAAG GGCCACAGAT CCTTAGCAAA CATTAAACAT GGAAAAGATT TTGGAGGTAT ATTGCACTGA CCAAAGAGAC 001920 001921 ACTAGGGAAT GCAAGCTTCA GTCCCCTGAG TCGAGGAGAA AAAGAGCCTT GGGCCTGGAA ACCTCTAAAA TGGAGCTAGT 002000 002001 GAAGGACACA CCGTGAAGGG CAAGGCAGGC ATCCCGCCAG AAATATACGG CCCTGGCTCC TGCTGGCCAG AAGTGCCGCA 002080 002081 TCATTATAAA CAGCTCTAAC TTCGTGCTGC CCTGGCCTCC TGGGAGGTGT TGTGCCAGTC TCTGGAATAC CAGCGTTAGG 002160 002161 AGCAGCCTAG TCCAGGAGAG GAGGAAGGGC TTCCCAAGGT CACACAGGGA GAGAGGGGCC TTCCCCACAG GCCTAGACCA 002240 002241 CTCCCACTGT AGCATGCGAA GCAGCACAGG GCCTGCTGGG GGGGCAAATG CACAGGAAAC AGCCTGCATC TGTGCTAAAC 002320 002321 ACCATTAAGG GGTAGGGGTA GGGACAGGCA GGCTGGTGCA GACCCTCACT CAGTGTTGGG GTTGCCACTC ACCAAGGCAG 002400 002401 CTCCTCCCAT CTGTGTGCAT CTTGTACTGT GGATGGCAGC TGCACTCTGG GCCATCGGCT GTATCGTCAC AGGAGTGCTG 002480 002481 GCACCCACCG TTCCCATGGT TACAGGTCAC TGACAGCAAA ATGAATCAAT ACATAAAGCA CTGAGATTTC CACAAACACA 002560 002561 GGGCTGTGTT TGCTCCAGAG AAATTCTGAT Tttcattctg caagtatttg agcacctagt gcatgccagg catggtgcac 002640 002641 gaaagacata actccaagtc agaccctgtG GTGTCTGTGT ATGCAGATAG TTACAATACA AATTGTAGAA ATGCTGAAAC 002720 002721 ATGGGTTTAA ACAAAGTCAT ACAGGAAGAG GGAGATGGGA GAGTTGGGGG AGAGACTTTT ATTATATAAG GGAGATTATA 002800 002801 CCAAGAGATT CTAGACTACT GCTTTGTTCT ATCTAGAGAA GTT |
Predicted Small Protein
Name | NONHSAT017908_smProtein_1631:1753 |
Length | 41 |
Molecular weight | 4446.1783 |
Aromaticity | 0.05 |
Instability index | 65.365 |
Isoelectric point | 5.92303466797 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0467358114417 |
Amino acid sequence | MWCCSLSPPGQCPLALQEKQKSTVLRLNELDCSSPYNCVC |
Secondary structure | LEEEELLLLLLLLHHHHHHLLLEEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |