NONHSAT018039
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018039 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1570 nt |
Genomic location |
chr11+:12108438..12111308 |
Exon number |
2 |
Exons |
12108438..12108935,12110237..12111308 |
Genome context |
|
Sequence |
000001 AACTGGGAGG AGAACAAGGA GATCACAGGC TCCAAACAAG ACCAAGCTTT CTCTTGGGAA ATGAGCTTTT CTCCCAGATG 000080
000081 GAGCTCCATC TGCCCTTGCA GGATCAGCTC CCCCAAGTGT GCCCTGCTCC ACCCTGGGGT TGACCAGCCA GCTCAGCCTG 000160 000161 CCTGCCAATA TGATGCCTGG AATTGTCTGT GGTTCTGGGG GCCAAGCCTT GTCAGGATCA TCACGTAAGG GTGTGTATGT 000240 000241 GCGGAAGGGT GGTGGCTGAG GCTCAGGATT CAAGGACTAT GGACCATGGT GGGAAAGTAG AGAATTGGAG CAGTGACAGG 000320 000321 TCAGGGACAT CCCTTCTGAT GTTCCTCAGT TCTCTTCTGT TCTCTGGGCT TCAGCAATCT GCTGTCTCTT GAACCCAGTG 000400 000401 AGGGGAGGGG TGAGTCAggc agaagaatga gctcaggtag gatggcacgt cagcagcctg gagtctgaca ccggccaaga 000480 000481 cactcagtgg cagagtaaca ggtatccgaa aggttcagct tgagtgggtg cctgggatgg ctcacccagg tggctggcac 000560 000561 tggatgccag ctctcatgct ggactcaact gggctgttga ctgcacatga cctctgcatg ggcaagggct tttcacaccg 000640 000641 gggtgctggg ttccacgagg caggaagagg atgctgctag gccaggtaag agttgtggca gcactggcac ggcatcactt 000720 000721 tctttctatt ctattggtca aaacaatcac agcatcgacc cttggaaaca tagatgtcac atcttgatag ggaaatggca 000800 000801 aggtcacatt tcaaaagaga agataggatg ggagatattg ttgcggccat ctttgggaaa tacaatctgc cacagttgca 000880 000881 tagcattatt gaagcaATGA GTAACACAGA CAGACATTTT TATTTTCCAG GTCTCCATCT TCCTTGCAGC ACTGCTTTCT 000960 000961 GTCCAGCCTC CCTGCATACC CACTTCATCA CACAGGGAAT GGCAAACACT GAGCTGCTGG GGGAAAGGCC TGCAGGGCCC 001040 001041 TTCTGAGCTT TGTCGCCAGC tctggggtca gcaggaaaga atgcagtgac tgaccagtga tcactgcctc aaggaccacg 001120 001121 agaagagggG AAAGCCCTGG TATGAATGAG CTTGTACCCT TCACCTCGCT GCGTCTTGGT TTCCTCTTTT ACATTTTTCT 001200 001201 AAGGATTCTT CAGTATGGAT ATGAGGAAAT ATAATTGTCT AATTTCATTA GAGAGTGGAT CCAGGCAATG CAAGCCGAGT 001280 001281 GCTTTGCCAG TACTAGGTGC GGTGGAGGAA AAAATTAGAT TATTCACAGG TTCAAATTGA GATTCTCACC TTATTACTCA 001360 001361 CACAGAGAGA CTAAAGGTAT CAATTTCTGC TCTCCCCAGC CAGGCCTACC CACAGGAGCT AGAGATATTC AACTGCCTTA 001440 001441 TTTAGCTTCA CCCAGGCCCA GGAGCTGCTG AAATTAGACC TGGCCTGGTA GTGGGAACCC CATCTGGGCA GTGGGAGAGA 001520 001521 AAGGGTTAAG ATCTGTGATc atcgcatgtt cttactcata agtggaagcc |
Predicted Small Protein
Name | NONHSAT018039_smProtein_773:1045 |
Length | 91 |
Molecular weight | 10186.5491 |
Aromaticity | 0.1 |
Instability index | 50.3201111111 |
Isoelectric point | 6.63507080078 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0370687429512 |
Amino acid sequence | MSHLDREMARSHFKREDRMGDIVAAIFGKYNLPQLHSIIEAMSNTDRHFYFPGLHLPCST AFCPASLHTHFITQGMANTELLGERPAGPF |
Secondary structure | LLLHHHHHHHHHHLHHHHHHHHHHHHHHHLLLHHHHHHHHHHHLLLLLEELLLLLLLLLL LLLLLHHHHHHHHHHHHLLHHHLLLLLLLL |
PRMN | - |
PiMo | - |