NONHSAT018043
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018043 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3235 nt |
Genomic location |
chr11+:12237841..12241075 |
Exon number |
1 |
Exons |
12237841..12241075 |
Genome context |
|
Sequence |
000001 TGCTCGACAA AGGTGTCATC ATTAACGTAC GTACCTCTTG GCTGCGATTT CCCGACTTCG CGACCTGGGC TGGTGACATC 000080
000081 AGCAGGTGTG AAGGCAGATG TCGTCCTGCC AGAAACTGAG CGAGGGGAGG AGGGGGGAAG GTGCCACCAG CTTACACCCT 000160 000161 TCTTTTTCTT GGTGTTACAT GAGTATTGGA TAAAGGAGCC CACGCCAATA TGCACAGAGA ATTTTCTGCA GAGGGACGTG 000240 000241 TGCTGCTGTG AGACCTTTAC CAGGTGTTAA TGTGGATCAA CTGAGTCTTT TCCTTCCCAA GTCTCATCCA GCCTTGCCTC 000320 000321 TTCTCTGGGA GGTCACATGT CATTTGGAGG CAGATGGGGG CTCCTTGTCC TAATGAGACA TAGGCATCCT TTGACTTGTG 000400 000401 AATTTCATGC TGTGGAGCCT TGTCACAGTG TGGGGGAATT TCATTATTCA tgcagtcaaa aagactcgat ctgcatcttg 000480 000481 actctgccac atacctcctc cagactgtgg gcaaactgtg tatccttcct gaacctcagt cttcttatct acaaaatagg 000560 000561 aatgatagtt tctgcctgaa agggttcttg gaaggagcaa acagaagata tatatagagc acctggcaca gtgcccggca 000640 000641 GAGGGTGGGT TTGTAGATTC CCTCTGTAAC TTCTCAGCCT TGTTTGCACA CTGGCTTTTT TGTCCTGCTG GCTTCCTGGC 000720 000721 CTCTGCTTCG TGGCCTTGCG ACTTCATGCT TAAGCACGGA GCAGGGTTGG AAGGAAGAAA CATGGAGTAG TGGCCCCTGA 000800 000801 CTGGAAGCTT CTTCGGACAG GTGTACAACC CTTCCAGAGC CCCTGTAGTT GCTGCCACTG TCACTGCTGC TGCTGCAACC 000880 000881 TCAAGATAAG GATCACACTG CCCAAGTTCA GCCTGCTGTC TGGGTGTCAG CCTGGAGCCC AGGCAGCACG GTGGCCATTC 000960 000961 ATTGCTGCTT GTCAGAGAAG AATGCAGCTA TCTTCTTTCC TGCGTGTGCT GGCAGCCGTC TGGGTGGCAT TAGTAACCCA 001040 001041 GCCACCCCGT GGGCCTTCTC CACTTCAGCT CAGGTCTTTG CTGAGAGCCT GAGTTGTAGA CGGAGGCTGT GAATGCGGGC 001120 001121 TTGGTGAAGT GGGCTGAGCA CGCCAGCAGA TGGGTGGGCG ATGGGCTTCA GCAGTGTCCC ACTGCTGACT GTCAGTCTGG 001200 001201 GAGTGGTGGC GTCCCCTTCT TCCCTCTGCC TCACAGAAGT TGCCTCCTGA AGTTGCCGCC TTAGTCTGAA ACTGGGGGGT 001280 001281 GCAGGGGTGT AGGGGTAGCG GGCAGCTTTG CAGAGGAGAG GTTAGGCAGG CAGGCAAAGC TTGATGGGTT TTGTGTTTTG 001360 001361 CAGAGCACCG TGGCCTCCTG GGATGCTAAG GTCACCCTCA GGTCATCCCA GGTGTTTGCT CATGGCAACT CGCTTCCCTG 001440 001441 GCGGTTGTCA AAGCCCCTCC AGGCCCATGC TTGTCTTCAC CAAGGCCTTT CTTTCTCCTT CAGAGGCCCC TGGGAGCAGC 001520 001521 TCCTGAGCTG GTGCTGAGGA GCCTCAAGGT ACAAGATGGG AAAGAAATTG GAGGCCACAG GCTGGACACC TGATTGGAAC 001600 001601 AAGAGCTATA GCCTGAGCGT CCAGGTGTCC AGCCAAGTTC CCAACCCATC TTCCCTGAGC CGCTTAAATT TACATTGTTC 001680 001681 TCTTGCTCCC TGGAGGAATG GCAAGTTTTC TGTTTTCCTC TCCCTACATG GATCCATATC TTCCTATAGC cacacagaag 001760 001761 gtgccaagta aatgtttgtt gaatgaatga CTGACCTCTG GACAAGAGGT TTTCCTGCTT CCCCATTGAT TCCAGCTGAT 001840 001841 CTCTGGGCTT CTTTCCATGG CTACCGAAGG AAGAGTAAAG TTTCTCTTCA AGCAGCCGTG CCTCTGGGCT CTCAGCTGTG 001920 001921 CCCATCTTTC TCTTCCCCAC AGGGAGGATG TCCCATCCCA GAGCCTCCCT GGGCCCCTGC CTCTGCTGGC CCATACGTGT 002000 002001 GTGGGCTGGG ATTCTGTCCT CCTGTCCTTG TCCTCATCTG CTCCCTATGG TTTTGCTCCT TCTTCCATCC CCCCACTCAT 002080 002081 CTGGGACCCT CCAGCCACTA AGAGACTCCA CAGCAGCCCT AGGCCAGCTC TAGCCTAGTG TCTTCCCTTT GCTAGGTCCC 002160 002161 CACTCTCCTG CATGAGGCGT CCACGCCAGG CACTGTCTTC ACTGTGTAAT GTCACCCACT CCATCTTAGG GATGCTTGGG 002240 002241 TCATATTTTG AAGGGGGGGT GTTTGAGACC TCTCCCTTCT CTCTTCCCCC ATCTCACCTC CACGCCTTCG GAGAGAGAAG 002320 002321 TGATCATGTG ACCGCGGAAA CAGGGATCAG AAAGGAAATC AAATAACAGG AATTCCATCC TGGACACTGG GGCCTGACAA 002400 002401 AGAGCTCTTG GACCAGTGCT GGATGCAATT TGGGCGGTTT GGTTTGAATG GGGGAAATAT GAGTTTCCAG AACAGGGTAT 002480 002481 TTGAAATCAT GGCTACTCAG AAAATTGAGG CAGTGGTCAC TCTGGCTGTA AATGCGGCAC TCTGTGATTG TCAAGACCTT 002560 002561 TGTAATTGAG GGTGCCTTGG CTGGGTCCAG GATATACTTC ATCATAAGCC ATATCTGGAG CCAGCATGAA TTACAGGGGA 002640 002641 CAGgaattcc cattcatcgg tcacttccca catggggcta gggatttcgt gtgtacactc attccatctt ctcatgtggc 002720 002721 tctgtgaagt aggttttgat attccctttt tacagatgag agagtggaga ctctgaaaag ttaaataact ggcccagatt 002800 002801 tagttagtaa acagcagagg tggactttga cccgttgctc tcactggccc caaagcctgt gttcatgtta cacactggtc 002880 002881 ccctcCCACT CCAGGTGTCT GTACTTTTTG TGTCACCTTT GAGAAAGGTG GTCTTTTAGT TTCTTTAGCC ACACGGTGAG 002960 002961 CAGCTTGGAC TCTGGGGATA CACTAAACTT GCCAGCTCTC TTCAATCCTC ACATCCTGTG TTTCATTGCT AGTGTCCCTC 003040 003041 CAGGATGGAT ATTCCAGTCC TCGCAGCTCA GGGCTCTGCA CTCCCCATGA AAGAAGCATA ACAATTAGCA CCAAAAGCAa 003120 003121 gctactgggg aggctgaggc aggagaattg cttgaacctg ggaggcggag gttgcagtga gccaaaatca caccattgct 003200 003201 ctctaacctg ggagacaaga gcgaaactcc atctc |
Predicted Small Protein
Name | NONHSAT018043_smProtein_1856:2137 |
Length | 94 |
Molecular weight | 10022.5687 |
Aromaticity | 0.0752688172043 |
Instability index | 70.9806451613 |
Isoelectric point | 8.61370849609 |
Runs | 10 |
Runs residual | 0.0233970529669 |
Runs probability | 0.0368662780428 |
Amino acid sequence | MATEGRVKFLFKQPCLWALSCAHLSLPHREDVPSQSLPGPLPLLAHTCVGWDSVLLSLSS SAPYGFAPSSIPPLIWDPPATKRLHSSPRPALA |
Secondary structure | LLLLLLEEEEELLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHLLLLLHHHHEEELLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |