NONHSAT018772

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT018772

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4638 nt

Genomic location

chr11+:35107760..35142723

Exon number

5

Exons

35107760..35107870,35108965..35110133,35112276..35112331,35119065..35120242,35140600..35142723

Genome context

Sequence
000001 GGTAGATGCT GGAAATATTA ACTATTATTA ACAAATATTA CTTAGGGCTT GCTATAGGTG AGGCACCGTA CTGGATTCTA 000080
000081 AGCCTCTGGT CCCTGCTCTC AGGGCATCAT GAAAAAATCC TACTGTCTAT CTTTGAACCA AGGACCCCAC CCAAAAGGGA 000160
000161 GAAACCTACA AAGAACTACT TTTTTTGGAG CTCTCCAATT GAAATGGTTC CCAAAAGGTG ATTGCCAATT TGCAATCTTG 000240
000241 CTACAGACAA TCACACTAGC AGGGCCATCA AGCCCATCCC ATGAGAATGA TCAAATCTCC AATAAGACTC AGCTGTTCCA 000320
000321 TGGGGGAGTG AGGGGAATGA AGCATTCAGA AAGATAAAAT CATCTGGGTT TTCTGAATGT TTTCCCTGCT GAGGTTGAGG 000400
000401 CTGAGAACTT GCATTGGCTG AAGACTTGCA GCTGGAACCA GATAGGAAGT AAGCTTCTGG AAGCACTAAA ATGAATTGTC 000480
000481 ACTCCCACTC TCGATACCCA CAGCTTCAAA ACCACCAGAT GCTGACAGCT GCTGTGGAAA TCTAAGCAAG TGGAGGGATA 000560
000561 TCCAGATTGA GCTGGCCAAG TTTGGTACAA GAGCTAAGAG TCTGGGAACA ATGGGAGGTC AGCTTTCTGT GTCACTGTGG 000640
000641 ATACAAAGGA AGTACTTTTG AGACACAGAC AGGAAGTGAC TGAGGACTTT AAGGGCAGCT TGGGCTATCC AGGAAAGTTC 000720
000721 TTCATTCTTG TTTTTTTCTG CTGAGGCTCT AGAGGGACAC CTGTCAGACT GACCAAGGCC GAAGATGGCT CCCTACCAGA 000800
000801 GAGATTCAAC TGAGGGCTTG CGATAGGTCT TGTGACATTG CTATTGATCT TGAGACATTC ATCTGAAGCA TGATTGTCAC 000880
000881 TGGCTTCAAA CTTTCCTCAT CATAAGAGAG GGACTGGGTC TACTTCAAAT GTTTCGCACT AATGAAGTTA ACATTCCCTT 000960
000961 TCATGGTGAG GTAAGTTGAT TGCATTAACA GCCCCAGTTT TTCATTCTCC CCTGAGGCca cccatttggt agtaccctcc 001040
001041 cacactgatt cttggtttag tcatgtaact tgctttaacc tccaacagaa gcttgaaaaa cacttgttca tttctgcttg 001120
001121 ccctccttaa gctctgccct catcatgaga ccatgcccag gctagtctgc tggaaggaag tcagaggcac acggaagaga 001200
001201 gccacattca gccaaggcca ttctagacca gttgttccct gtcacttcac taattggcca cagcacaagg taagtacagc 001280
001281 gttttgttga agattgaatg agtgtgtaaa gtgcccaaca gaaagtctgg cacatggtac acggatggag ctggaagcca 001360
001361 ttatcctcag caaactaatg taggaacaga aaaccaaata ttgcatgttc ttacttataa gtgggagctg aacaacgaga 001440
001441 acacatggac acagggaggg aaacaacaca cactggggcc tgtccagcag taaggttgag gcagggaaag cattaggaaa 001520
001521 aatagctatg catgctgggc tgaatactgg gtgatggatt gataggtgca gcaaaccacc atggcatatg tttacctttg 001600
001601 taagaaacca gcacatcctg cacatgtacc ctggaactta aaataaaaat taaaaTGTTT TTTAAAAAAG TCATGATGTT 001680
001681 TTCTCAGCAG CCCAGTTTAC TTTTCCAGAC CCCTCTGGCA TGTGTTACTC CAGAAAAAGG CCGGTGTGTG TGAAACCCAG 001760
001761 GCCACTGTGA CACTGTATAA TGAGAGGGAC AGGCAGGGAG GAGGGAGAAG GTTGCTCCAG CCAAAGCCAG CAGCACCCCG 001840
001841 GGAGCTGCTG TATCTGGCCA AAGGCTGTTT ACACTTTGCT GCAGACATCG AGGCCTGCTG TTCAGGGGAG GAGGATTTCA 001920
001921 ATATGTGACC CCACAAGGTA CAAGCAGAGC CACCTCTGTC AGACTGACCT CGACAGAGTG GTAGGGCCAA GTTTTAGAAA 002000
002001 GAAGTTACAT TGGATAGGGA GGCAGGAAAG AAACACTTTG ATTCTTGCTT TCTGAGCTTG TTTCCTGTAC TCTTTGGAAA 002080
002081 AAGAAGACCA GAAAACAGAG CACCTCTCCA ATTGTGTGAC AGAATGGGAA AATAATCAGA ATTGATGGTG GTGGCTCTGC 002160
002161 TTCAATACTG GCCGCTGCTG TCTTCCACCT ACATATTCTC CTCcaagtcc tgtagtctct ctgtgcaaac tcagattcca 002240
002241 catctgtaaa atgggaacaa taacaaagtt gacatgagga tcacatggaa taacgtatgt CTTGGACTTT TTTAAGGCAG 002320
002321 GCAGTTATGT GCACAAATAT TTCATTTGCT TATTTGTCTT TTTCTCTTTA ACTTTTCCCT TTGTCCTACC TAATCCCTAT 002400
002401 TTCTCCTTTT TTTTCCATAA GCATATACCT CAGGCCAAAA ATGTtcaaat gtttccacca aaaatgcccc taacaagcaa 002480
002481 aaaaatatgt aaaaaggttt agcccaaagt gtccgtgcag ctgacagcca gcttgcaacc acaaggatgg ccaccatgaa 002560
002561 gtcaaaggag aactgagaga agaaccaaga aacagaccag gaaccctgac cgaactgctc tgaaaagccc ctgcttctgg 002640
002641 actccattgt gtaaaataca tttccccgtt gcctaagcct ggtcaagaca tacttttgtt acttgcagct aaaagaatcc 002720
002721 CAGCGGATAT ATTCATCTTT CCAGCTTTAT ctccagccat acaggataac ttgcttctct tgaaatttcc cctcacagtc 002800
002801 ctaccttggt gccttctctc attcttgtct tcacctggaa tgctctcccc aaactatatt gttaaggtct tatacactct 002880
002881 tcaaagtcca gattcaaagg caccaactta tcctcattca gaaggactct ctgccctcct gagtctccaa gatgctttgt 002960
002961 gtacacctga tggcaccAAA ACATCCACTC TACAGCACGC TCATCTGCCT CCTTCACGGG ATGGCATATT CCAGGGAGGC 003040
003041 TGCTTCTCTT TATAATTTTG AATCCCCTAG TCTGGAACAA AGTGTGCTTA GGAGATATTT GTTGCATTAA GATGTGAAAT 003120
003121 TCAATACAAA TGATAACCAA AAGTCAAATG ATGGTAACAA AAGCAATCAG TGTTAAGTAA GGCAGAAAGG GATGGGATCT 003200
003201 CTCTGGGCTG GAGCAGTGAG GGTgggaact gtggctcatg tcttgtaatc ccagcacttc gagaggctga ggtcgaagga 003280
003281 ttgcttgagc ccaggagttt gacagcaggc taggcaacac agcaagaccc tgcctctaca aaaaattaaa aaattagcta 003360
003361 ggtatggtag cacgcaactg tagtcccagc tactcgggag gctgaagtgg aagagttgct tggggccaaa agtgtgaggc 003440
003441 tgtactccac cctgggtaac agagtgagac tctatcaaaa agaaaaaaaa aaagaagaag aagaaGGAGA AAGAAAAGAA 003520
003521 GTAAAGAAGA AATAAGTGCT ACTTATGTCT TGGGATGTGC CCCAACTAAT AGGTAGAATT TGGATATGTT GGCTTGGGGG 003600
003601 GAATTCCTCC ATGGAGAGGA CTAAGCTGAT GCAGGGATCT GTTTCTCATT CCTCTACTCA TTGTAGTATG TTTGAGGGTT 003680
003681 TCTTTGTAAT TGTTGGGAAA TGTGGTCTCT GTAATAAAAT TATGGTGGGT GGAAGAGGAG AAAAGTTGGT TTTGTCCAAG 003760
003761 TGGAAATGAG TTCTTCATTT TTTCTATGAT TATAAAATGA ATAAACACAA GTGGCAGTTG GGGATGGGCT GGGAGCATTT 003840
003841 CAAGATGGTT TTTATAAGCC CAACAAAGTA TAGCTGTGAG ACAGAGGGGA TGTTGAACTC ATCACCATGT TCCTCCAGGT 003920
003921 ATCCAGACAT TCCCTCTGTT TCAGGGGCTT AAGTGTTCAG GCTGTTATAA AGAGGGTTGT CCATCCATAT AAGGTACTAT 004000
004001 GGCAGACACA TTATGTGTTC TTATTATCTC ATCTTCTTCA TGATCACACG AGAAGACTAC aagtgctgcc atgtgactgg 004080
004081 gtcttgccag tggaatatag gtggtaataa tgtacaactc cacttccaag cctagcccct aaaatggccc atgcaatctt 004160
004161 tcatggtctc tctctcattg tctggttgaa tctacaagtt ccagtggaag actctgagga ggacttaagc aaggcaaacc 004240
004241 caccagatga aggaagcctg aatcccagag tctcactgct tggaggaaaa ctgctctaga gagctgcttg accaagaaca 004320
004321 cctgcattga acctcgtgtg agaaagaaat aaagttctac tactacatta acacctaaaa tgttgagtct gtttgttagc 004400
004401 tagcctaccc tgattaataT GGATGTCAAA GAGATGGCTT AGCAAAATCT GAGGGCATGG GTAAATGGCA GTCCTATCAA 004480
004481 GATGATCAGC ACATGACAGG TAGGAGGCTT TTACCTGATG GTCATGAGAA GGAGAGGTAA TACAGACCCT CAGTACTGGA 004560
004561 AAGATTCAGT GTTTTCTCCA CTGGCAAGGG ATGTTTTGCT TTAAACTTCC TAATGTTGGC TGCAAATGGC ACCTGCTG
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Predicted Small Protein

Name NONHSAT018772_smProtein_5:220
Length 72
Molecular weight 8402.8693
Aromaticity 0.140845070423
Instability index 58.4
Isoelectric point 9.39727783203
Runs 11
Runs residual 0.00637509266123
Runs probability 0.0273482038188
Amino acid sequence MLEILTIINKYYLGLAIGEAPYWILSLWSLLSGHHEKILLSIFEPRTPPKREKPTKNYFF
WSSPIEMVPKR
Secondary structure LHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHLLHHHHHHHHHLLLLLLLLLLLLLLLEE
EELLEEELLLL
PRMN -
PiMo -