NONHSAT018772
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018772 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4638 nt |
Genomic location |
chr11+:35107760..35142723 |
Exon number |
5 |
Exons |
35107760..35107870,35108965..35110133,35112276..35112331,35119065..35120242,35140600..35142723 |
Genome context |
|
Sequence |
000001 GGTAGATGCT GGAAATATTA ACTATTATTA ACAAATATTA CTTAGGGCTT GCTATAGGTG AGGCACCGTA CTGGATTCTA 000080
000081 AGCCTCTGGT CCCTGCTCTC AGGGCATCAT GAAAAAATCC TACTGTCTAT CTTTGAACCA AGGACCCCAC CCAAAAGGGA 000160 000161 GAAACCTACA AAGAACTACT TTTTTTGGAG CTCTCCAATT GAAATGGTTC CCAAAAGGTG ATTGCCAATT TGCAATCTTG 000240 000241 CTACAGACAA TCACACTAGC AGGGCCATCA AGCCCATCCC ATGAGAATGA TCAAATCTCC AATAAGACTC AGCTGTTCCA 000320 000321 TGGGGGAGTG AGGGGAATGA AGCATTCAGA AAGATAAAAT CATCTGGGTT TTCTGAATGT TTTCCCTGCT GAGGTTGAGG 000400 000401 CTGAGAACTT GCATTGGCTG AAGACTTGCA GCTGGAACCA GATAGGAAGT AAGCTTCTGG AAGCACTAAA ATGAATTGTC 000480 000481 ACTCCCACTC TCGATACCCA CAGCTTCAAA ACCACCAGAT GCTGACAGCT GCTGTGGAAA TCTAAGCAAG TGGAGGGATA 000560 000561 TCCAGATTGA GCTGGCCAAG TTTGGTACAA GAGCTAAGAG TCTGGGAACA ATGGGAGGTC AGCTTTCTGT GTCACTGTGG 000640 000641 ATACAAAGGA AGTACTTTTG AGACACAGAC AGGAAGTGAC TGAGGACTTT AAGGGCAGCT TGGGCTATCC AGGAAAGTTC 000720 000721 TTCATTCTTG TTTTTTTCTG CTGAGGCTCT AGAGGGACAC CTGTCAGACT GACCAAGGCC GAAGATGGCT CCCTACCAGA 000800 000801 GAGATTCAAC TGAGGGCTTG CGATAGGTCT TGTGACATTG CTATTGATCT TGAGACATTC ATCTGAAGCA TGATTGTCAC 000880 000881 TGGCTTCAAA CTTTCCTCAT CATAAGAGAG GGACTGGGTC TACTTCAAAT GTTTCGCACT AATGAAGTTA ACATTCCCTT 000960 000961 TCATGGTGAG GTAAGTTGAT TGCATTAACA GCCCCAGTTT TTCATTCTCC CCTGAGGCca cccatttggt agtaccctcc 001040 001041 cacactgatt cttggtttag tcatgtaact tgctttaacc tccaacagaa gcttgaaaaa cacttgttca tttctgcttg 001120 001121 ccctccttaa gctctgccct catcatgaga ccatgcccag gctagtctgc tggaaggaag tcagaggcac acggaagaga 001200 001201 gccacattca gccaaggcca ttctagacca gttgttccct gtcacttcac taattggcca cagcacaagg taagtacagc 001280 001281 gttttgttga agattgaatg agtgtgtaaa gtgcccaaca gaaagtctgg cacatggtac acggatggag ctggaagcca 001360 001361 ttatcctcag caaactaatg taggaacaga aaaccaaata ttgcatgttc ttacttataa gtgggagctg aacaacgaga 001440 001441 acacatggac acagggaggg aaacaacaca cactggggcc tgtccagcag taaggttgag gcagggaaag cattaggaaa 001520 001521 aatagctatg catgctgggc tgaatactgg gtgatggatt gataggtgca gcaaaccacc atggcatatg tttacctttg 001600 001601 taagaaacca gcacatcctg cacatgtacc ctggaactta aaataaaaat taaaaTGTTT TTTAAAAAAG TCATGATGTT 001680 001681 TTCTCAGCAG CCCAGTTTAC TTTTCCAGAC CCCTCTGGCA TGTGTTACTC CAGAAAAAGG CCGGTGTGTG TGAAACCCAG 001760 001761 GCCACTGTGA CACTGTATAA TGAGAGGGAC AGGCAGGGAG GAGGGAGAAG GTTGCTCCAG CCAAAGCCAG CAGCACCCCG 001840 001841 GGAGCTGCTG TATCTGGCCA AAGGCTGTTT ACACTTTGCT GCAGACATCG AGGCCTGCTG TTCAGGGGAG GAGGATTTCA 001920 001921 ATATGTGACC CCACAAGGTA CAAGCAGAGC CACCTCTGTC AGACTGACCT CGACAGAGTG GTAGGGCCAA GTTTTAGAAA 002000 002001 GAAGTTACAT TGGATAGGGA GGCAGGAAAG AAACACTTTG ATTCTTGCTT TCTGAGCTTG TTTCCTGTAC TCTTTGGAAA 002080 002081 AAGAAGACCA GAAAACAGAG CACCTCTCCA ATTGTGTGAC AGAATGGGAA AATAATCAGA ATTGATGGTG GTGGCTCTGC 002160 002161 TTCAATACTG GCCGCTGCTG TCTTCCACCT ACATATTCTC CTCcaagtcc tgtagtctct ctgtgcaaac tcagattcca 002240 002241 catctgtaaa atgggaacaa taacaaagtt gacatgagga tcacatggaa taacgtatgt CTTGGACTTT TTTAAGGCAG 002320 002321 GCAGTTATGT GCACAAATAT TTCATTTGCT TATTTGTCTT TTTCTCTTTA ACTTTTCCCT TTGTCCTACC TAATCCCTAT 002400 002401 TTCTCCTTTT TTTTCCATAA GCATATACCT CAGGCCAAAA ATGTtcaaat gtttccacca aaaatgcccc taacaagcaa 002480 002481 aaaaatatgt aaaaaggttt agcccaaagt gtccgtgcag ctgacagcca gcttgcaacc acaaggatgg ccaccatgaa 002560 002561 gtcaaaggag aactgagaga agaaccaaga aacagaccag gaaccctgac cgaactgctc tgaaaagccc ctgcttctgg 002640 002641 actccattgt gtaaaataca tttccccgtt gcctaagcct ggtcaagaca tacttttgtt acttgcagct aaaagaatcc 002720 002721 CAGCGGATAT ATTCATCTTT CCAGCTTTAT ctccagccat acaggataac ttgcttctct tgaaatttcc cctcacagtc 002800 002801 ctaccttggt gccttctctc attcttgtct tcacctggaa tgctctcccc aaactatatt gttaaggtct tatacactct 002880 002881 tcaaagtcca gattcaaagg caccaactta tcctcattca gaaggactct ctgccctcct gagtctccaa gatgctttgt 002960 002961 gtacacctga tggcaccAAA ACATCCACTC TACAGCACGC TCATCTGCCT CCTTCACGGG ATGGCATATT CCAGGGAGGC 003040 003041 TGCTTCTCTT TATAATTTTG AATCCCCTAG TCTGGAACAA AGTGTGCTTA GGAGATATTT GTTGCATTAA GATGTGAAAT 003120 003121 TCAATACAAA TGATAACCAA AAGTCAAATG ATGGTAACAA AAGCAATCAG TGTTAAGTAA GGCAGAAAGG GATGGGATCT 003200 003201 CTCTGGGCTG GAGCAGTGAG GGTgggaact gtggctcatg tcttgtaatc ccagcacttc gagaggctga ggtcgaagga 003280 003281 ttgcttgagc ccaggagttt gacagcaggc taggcaacac agcaagaccc tgcctctaca aaaaattaaa aaattagcta 003360 003361 ggtatggtag cacgcaactg tagtcccagc tactcgggag gctgaagtgg aagagttgct tggggccaaa agtgtgaggc 003440 003441 tgtactccac cctgggtaac agagtgagac tctatcaaaa agaaaaaaaa aaagaagaag aagaaGGAGA AAGAAAAGAA 003520 003521 GTAAAGAAGA AATAAGTGCT ACTTATGTCT TGGGATGTGC CCCAACTAAT AGGTAGAATT TGGATATGTT GGCTTGGGGG 003600 003601 GAATTCCTCC ATGGAGAGGA CTAAGCTGAT GCAGGGATCT GTTTCTCATT CCTCTACTCA TTGTAGTATG TTTGAGGGTT 003680 003681 TCTTTGTAAT TGTTGGGAAA TGTGGTCTCT GTAATAAAAT TATGGTGGGT GGAAGAGGAG AAAAGTTGGT TTTGTCCAAG 003760 003761 TGGAAATGAG TTCTTCATTT TTTCTATGAT TATAAAATGA ATAAACACAA GTGGCAGTTG GGGATGGGCT GGGAGCATTT 003840 003841 CAAGATGGTT TTTATAAGCC CAACAAAGTA TAGCTGTGAG ACAGAGGGGA TGTTGAACTC ATCACCATGT TCCTCCAGGT 003920 003921 ATCCAGACAT TCCCTCTGTT TCAGGGGCTT AAGTGTTCAG GCTGTTATAA AGAGGGTTGT CCATCCATAT AAGGTACTAT 004000 004001 GGCAGACACA TTATGTGTTC TTATTATCTC ATCTTCTTCA TGATCACACG AGAAGACTAC aagtgctgcc atgtgactgg 004080 004081 gtcttgccag tggaatatag gtggtaataa tgtacaactc cacttccaag cctagcccct aaaatggccc atgcaatctt 004160 004161 tcatggtctc tctctcattg tctggttgaa tctacaagtt ccagtggaag actctgagga ggacttaagc aaggcaaacc 004240 004241 caccagatga aggaagcctg aatcccagag tctcactgct tggaggaaaa ctgctctaga gagctgcttg accaagaaca 004320 004321 cctgcattga acctcgtgtg agaaagaaat aaagttctac tactacatta acacctaaaa tgttgagtct gtttgttagc 004400 004401 tagcctaccc tgattaataT GGATGTCAAA GAGATGGCTT AGCAAAATCT GAGGGCATGG GTAAATGGCA GTCCTATCAA 004480 004481 GATGATCAGC ACATGACAGG TAGGAGGCTT TTACCTGATG GTCATGAGAA GGAGAGGTAA TACAGACCCT CAGTACTGGA 004560 004561 AAGATTCAGT GTTTTCTCCA CTGGCAAGGG ATGTTTTGCT TTAAACTTCC TAATGTTGGC TGCAAATGGC ACCTGCTG |
Predicted Small Protein
Name | NONHSAT018772_smProtein_5:220 |
Length | 72 |
Molecular weight | 8402.8693 |
Aromaticity | 0.140845070423 |
Instability index | 58.4 |
Isoelectric point | 9.39727783203 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0273482038188 |
Amino acid sequence | MLEILTIINKYYLGLAIGEAPYWILSLWSLLSGHHEKILLSIFEPRTPPKREKPTKNYFF WSSPIEMVPKR |
Secondary structure | LHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHLLHHHHHHHHHLLLLLLLLLLLLLLLEE EELLEEELLLL |
PRMN | - |
PiMo | - |