NONHSAT018787
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018787 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2206 nt |
Genomic location |
chr11-:35254171..35256403 |
Exon number |
2 |
Exons |
35254171..35254874,35254902..35256403 |
Genome context |
|
Sequence |
000001 AACATTGATT GTTTTAATTA TTAGTCAGTA CTCCAACTTT AAGtgttctc tagacctgct gtacagctgt catcttggga 000080
000081 tctcccttta tcatcatttt aagaactccc tctactttgt tttctgaaac tcatgtcctc tcctctcttg gtaactccct 000160 000161 tgttttgatg gagtacatcc tttgggagtt gcctgtgaat gggtgagcag gtttggagac tatgattacc taaaatctct 000240 000241 ttattccatc cttatactta atttgcagct taactaagtt agaattctag cttggaaata attctttcag tattttgagg 000320 000321 ccctgtttca tggtcttcta tcttccaatg tggccattga gaaatctgat tctattctga ttgttgatcc tccatgtatg 000400 000401 tatttttcct ttctagatgt tcataggatc atttctttgc cccaggtgtc atgaattttt aagataatat gcattagtgt 000480 000481 gggtctgttt ttattcattt tactaagtac tcaccttgtc cttagtcaag atattcatgt tttaaagttc tgggaagttt 000560 000561 tcttgatttt tttcttggat gagttcttcc tatttgtttt ctcttcctgt gactttgatt acagcatttg catgttaaat 000640 000641 ttcctggact gggtgccagt cttcccaatg tattcccccc tgtttccatt tatttgcttt tgctgtattt ctgagggtat 000720 000721 ttctttaact ttatcttgca aaccttctgt gaggtttatt tttaaatttg tgctctcaag tttacatttt taaagcttct 000800 000801 tttttaggtg ttctctatat gttccttttt atcctggcat tgtgtttttg ttttatagat ataccatctc ctcttatctt 000880 000881 actgagagta ttggtgacct ttattagaaa aagtttcctt ctctaagcag tttcttttct gtcaaggtac tttttcctgt 000960 000961 tttttgtagt ccctgacttt aatattagat gctttctcca aatgtctggt gctccttggt aacagctcat gtgtgagagt 001040 001041 aagctacaga aagctgactg agctttctgg gtgcctggtg gggcttgaga tgccatcttc attgcagatc gctttttttg 001120 001121 ggccatttcc ttggggaact accatgttaa tatttttaga attttctctc aggctcataa gattccccag caacactgag 001200 001201 cttctgcctg gagaacatat gcctagctcc cagcattctg agagccaagc tgggagagga ggatagggaa tctcaacact 001280 001281 ctttaagcat ggtttcactt tttcagtatg gcctttcttt tctttttttg tttcttttct tttcttgttt cttttctttt 001360 001361 cttatctttc ttttcttttt cagggtctca ctcttcaccc aggctgctgc gcagtggagc aatctcaact cactgcagct 001440 001441 ttgacctccc aggctcaaac atgatcctcc caactcagcc tcccgagtag ctgggaccac agttatattt tttatagaga 001520 001521 caagggtttg ccatgttgcc caggctattc tctaagctcc tgagctcaag caatccgccc tcctcaacct cccaaagtgc 001600 001601 taggattaca ggcatgcatc accatgcccg gctctcagtg tggtatttct aatgtcaact gtgtacgtgc tgttggactt 001680 001681 caaccagaga ctctctattt ccctgtctcc agaaaataaa cttctggtct tttgctgaga ttgggaaagg acggtgttca 001760 001761 gttacacaga gtaaggaagg ggacctggag ttctaactgc ttcttacata gactttaagc ttgtccccct aatcttagcc 001840 001841 tcatcttccc attcatttcc agaatagcta ttgagccttt tgatggttct gtcacataag tctggttgtt tctcaatttt 001920 001921 ccacactgca ggcttaggag tcagcttttc cagacttgtt cattcagtta ccaatcagct atcacttttc agcttcaagt 002000 002001 ttttgttgct cttgtctctt cttccaatct ctttaactcc actggttgat tccgtctgga aatatctctt tattttcttt 002080 002081 ttagaggctt acatgaggga atgaaggtat gtacactctc ctctctttaa ctggaagtcC AGGAGTAGTT CTTGGCTTTA 002160 002161 AAAGAACTAA CACTTCACTG TATCTCACTT AGTTTGAAAC ATGTGA |
Predicted Small Protein
Name | NONHSAT018787_smProtein_1307:1489 |
Length | 61 |
Molecular weight | 6749.7638 |
Aromaticity | 0.216666666667 |
Instability index | 50.0316666667 |
Isoelectric point | 6.69598388672 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.0592474827768 |
Amino acid sequence | MAFLFFFCFFSFLVSFLFLSFFSFSGSHSSPRLLRSGAISTHCSFDLPGSNMILPTQPPE |
Secondary structure | LEEHHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHLLLEEEEEEELLLLLLEELLLLLLL |
PRMN | LLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? |