NONHSAT021161

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT021161

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1123 nt

Genomic location

chr11-:46235493..46242861

Exon number

3

Exons

46235493..46235775,46237278..46237442,46242187..46242861

Genome context

Sequence
000001 tgggggatgg agtcttgctc tgttgcccag gctagagtgc agtggtgcga tctcggctca ctgcaacctc cacctcctgg 000080
000081 gtttaagcaa ttctcttggc ttagcctcct gagtagctgg gattacaggc acacgccacc acaaccagct actttttgtt 000160
000161 tagtagagac agggtttcgc catgttggcc aggctagtct tgaattcctg acctcaagtg atccatccgt cttggcctcc 000240
000241 aaaagtgctg gtattacaag cgtgagccac catacccggc cCAtttattt attttagaga cagggtctca ctatgttgcc 000320
000321 caggctggtc ttgaacttct gggctcaagt gatcctcctg cctcagcctc ccaaagtgct gggattacag gcgtgagcca 000400
000401 ctgcacccag ccCAGATATT TATTTTTGAA TGAtgctagg ctctgaggat gcaaaggttg tttcagttgt tattcctgct 000480
000481 ctgcaggagt tcccagtcca ggaggagata gTGGCAGGAG TGACaaacta tgccccagaa agccaggaaa ggctcctctg 000560
000561 gcaagtgacg ttgaactagg acttgaagat caagtaggag ttcaccaggc agacaggatg aggttagctg ggatatttca 000640
000641 acagcatgga caacagggca tgagaaaaTG GGAAGAGAGA ATGGGCAAGG GGTCATCGAT GGACCGGAGA TGGGATGGTA 000720
000721 GGGACAGAAA CTGCAGGGTC CGCAGAAGGA ACTGCTCACC GAAAGCCAAC AAGCTTGCCC TGTGGAATCC CAGAAAGGCC 000800
000801 CAGGAACTTC GGGACATCAC TGAAGGCAGA GTGAAGAGAG gaagagaaga cagagaaatg gaggggagaa aactattaaa 000880
000881 ataagtaata agaaaacttt ccccagaagt gcagaatctg aatttccagt ataaaagggt ccattgagcg ccaagaacaa 000960
000961 tgaaggaaaa aaggtcccac tcaggcctac gtatcattgt gaaatttcag aactagaggg ataaagaaaa gatcctaaaa 001040
001041 gcttcccgag agataaaaaa gaagattttt acaaaggatc agcaatcaga attgcctcag actgctcaat aaaaacatca 001120
001121 gaa
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Predicted Small Protein

Name NONHSAT021161_smProtein_617:883
Length 89
Molecular weight 10594.0986
Aromaticity 0.0454545454545
Instability index 58.8522727273
Isoelectric point 11.3583374023
Runs 11
Runs residual 0.00636363636364
Runs probability 0.0499189028601
Amino acid sequence MRLAGIFQQHGQQGMRKWEERMGKGSSMDRRWDGRDRNCRVRRRNCSPKANKLALWNPRK
AQELRDITEGRVKRGREDREMEGRKLLK
Secondary structure LLHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLH
HHHHHHHHHLLLLLLHHHHHHHHHHHLL
PRMN -
PiMo -