NONHSAT021502
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021502 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2106 nt |
Genomic location |
chr11-:58897606..58910228 |
Exon number |
5 |
Exons |
58897606..58897784,58901712..58903061,58903530..58903754,58907430..58907640,58910088..58910228 |
Genome context |
|
Sequence |
000001 AAGCGGAGGT GGAAGTTGGG GCGCAGGAAT GTGGCTGTCC CCGCCTGTAA ATCATGGTTG GGGAGGAGTC GCGGAGGCAC 000080
000081 CAGGCTGGGG TCTGCAGCGC GCCATCTGCT GCAGCACACA GGAGGCGCTG AGGCTAGTTG GAGACAGAGT CTCACTGTGT 000160 000161 CACCCAGGCT GGAGTGAAGT GGCATGATCT TGGCTTACTG AAACCTCCAT CTCCCAGGTT CAAGCGATTC TCATGCCTCA 000240 000241 GCCACTTGAG TAGCTGGGAC TACAGGATTT CGCCATGTTC CCCAGGCTGG TCTCAAACTC CTGAACTCAG GCAGCCCGCC 000320 000321 TACCTTGGCC TCCCAAAGTG CTAGGATTAC AGCCCAAATG ACCCTCCAAG ACCCTCTGGA GGCACCCGCA GTGCTCCTTA 000400 000401 ATTTGCAGCT CTACAGAATG AGACCAGCGT GGCAGCCCCC TTTCAGGACA GCTCCCGAGA CGAGACGCGA GAGCAGCCCC 000480 000481 TAAATCTCAC CCAGCAAAGC CGTTTCTTCC TAACCGGGCT GGGGAGTGCC GCGCGCTGCC AGCAGATGGC GACAGAGGAT 000560 000561 TAGCCTGCGG AAACCGGCCT TTTTATAGCC AACAAGAGCA AAAGCACACT GCAATGTCCA AACGAATTGC AGGCGTTTTC 000640 000641 TGCTCCCTGA AGCCTGGGAA TTAATTTATA TACTCAGTCC CTTTTCCCTT GGCTGGCCAT TGAAGTAGTT GAACCACAGG 000720 000721 ATTGGACTGT CCAGAATCAT TAGCCAGAGT TCACTGTGAG TGGACGTCTT TTAGTTCTGC TTCAACGCTA TAACCAACCT 000800 000801 TTACCAAAAG CAACAACAAA ACAAAAAACT GCAGAAACCA ATGAGTTCTG TTCACAAAGG ATGGCTCCTC ATGTCATCAC 000880 000881 ACCGGCAAGG AATGGACGAG CCTCTGATTT TTCTCTTCTT GGCTGACTTT ACAAGGTTGG ATGCAGTCCA TGAGGATCAT 000960 000961 GCAGCAAAGA CAGAAAGTGC TGGAGAAGCC CAACCTGCAG GGCCTCACCT TTAGCTGGTT TGTGTGGTTC CACTTCATGT 001040 001041 AGCTGTTGGA ACACCAGTCT CTCTAATGTG CTCTATGGGA TAGCTGTTAC CTTCCACTAA TTTATGTCTA ATACCTATAA 001120 001121 ACCTAAAGTA TCTTTTTAAA AATTTTATTC CGTCTTTTTG GAGGAAATTT TTGTGCATGC CAGATATAGT GTCAAGCATT 001200 001201 GGGATTGCTA AGATGAACGT AACATTGTCC TCACTACCCA TTAAGTCACA ATCTAGTAGA TGAGTAAAAG TAAAAAAAAA 001280 001281 AATTAAAAAA AGGGTTATAA CCATAATACA GAAGTGAACA GGTTGCAGTG GTAGCACAGA GAGGGCTTCA GGGATGCTGT 001360 001361 CACAGAGGTG GTAACATTTG AGATATAGAT TCCAAATTCA GATGTGTTTG CTGTTGCAAA ATTCCAGGGT CTATGTGCCC 001440 001441 AGTTCCTGAA CATTCCAGTG ATAATTTTTA CCTAAAATTT AGGTGGCAAA TGAATCTTAC TATAACCACT TGGAACCACT 001520 001521 GTGTTTCTGG TCCATCTTGT GAGGCCCATC TTTGGTTCAG AGGGATGGAG GCAGAAGTCA TACGGCAGGT AAGCTCAAGC 001600 001601 AGTGATACAT GACAGGGCTT TCAGAACTGG GGCCATGAAG AGCAGGCTTT ATTTGCATGC TGTTTAAAAA CAAGATTTTA 001680 001681 CAACTGATTT ACCCTATTAA ACACTTCCAT GAATAACTCA GTGGAGATTT ATTTGCAATA GTAGGATCAG GTGATTTGAA 001760 001761 ATCTTTAGTG TGTGTGGTTG TAGCAGGGGG AGTACTGGGT TCCAGCATTT AATAAGAGGA CCCATGGTTT TATGAAAATG 001840 001841 TCCAGAGATA TAATTTTGGT TAAGGTTATA CCTCATCTTT GGTTGTACAG TTGTTTCTTT TAGTTTCAGT ACAATCTAAA 001920 001921 ACAGGAAGAT GTCTCCAGGG CATGTCAGAG AACTTAGTGG CAGCTCCTCC CATCACAGGC CTGGTTACAC GGTTAGGTGG 002000 002001 AAAAGACAAG TTGTATGTAG AGATCATTAT CAGAAATTGC TAAACTCTGT CATCAAAAAC TCTGTTGGAA TGGATTTTAA 002080 002081 AATTTCTTAA TAAAAGATGA AACATG |
Predicted Small Protein
Name | NONHSAT021502_smProtein_1928:2089 |
Length | 54 |
Molecular weight | 6109.9395 |
Aromaticity | 0.0754716981132 |
Instability index | 50.8849056604 |
Isoelectric point | 10.2864379883 |
Runs | 8 |
Runs residual | 0.00931891394386 |
Runs probability | 0.0441066066067 |
Amino acid sequence | MSPGHVRELSGSSSHHRPGYTVRWKRQVVCRDHYQKLLNSVIKNSVGMDFKIS |
Secondary structure | LLLLEEEELLLLLLLLLLLLEEEEEEEEEEHHHHHHHHHHHHHLLLLLEEEEL |
PRMN | - |
PiMo | - |