NONHSAT021557
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021557 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1112 nt |
Genomic location |
chr11+:59856137..59861504 |
Exon number |
5 |
Exons |
59856137..59856294,59857165..59857294,59857809..59857943,59860265..59860321,59860873..59861504 |
Genome context |
|
Sequence |
000001 AACCCATTTC AACTGCCTAT TCAGAGCATG CAGTAAGAGG AAATCCACCA AGTCTCAATA TAATAATATT CTTTATTCCT 000080
000081 GGACAGCTCG GTTAATGAAA AAATGGACAC AGAAAGTAAT AGGAGAGCAA ATCTTGCTCT CCCACAGGAG CCTTCCAGTG 000160 000161 TGCCTGCATT TGAAGTCTTG GAAATATCTC CCCAGGAAGT ATCTTCAGGC AGACTATTGA AGTCGGCCTC ATCCCCACCA 000240 000241 CTGCATACAT GGCTGACAGT TTTGAAAAAA GAGCAGGAGT TCCTGGGGGT AACACAAATT CTGACTGCTA TGATATGCCT 000320 000321 TTGTTTTGGA ACAGTTGTCT GCTCTGTACT TGATATTTCA CACATTGAGG GAGACATTTT TTCATCATTT AAAGCAGGTT 000400 000401 ATCCATTCTG GGGAGCCATA TTTTTTTCTA TTTCTGGAAT GTTGTCAATT ATATCTGAAA GGAGAAATGC AACATATCTG 000480 000481 GTGAGAGGAA GCCTGGGAGC AAACACTGCC AGCAGCATAG CTGGGGGAAC GGGAATTACC ATCCTGATCA TCAACCTGAA 000560 000561 GAAGAGCTTG GCCTATATCC ACATCCACAG TTGCCAGAAA TTTTTTGAGA CCAAGTGCTT TATGGCTTCC TTTTCCACTG 000640 000641 TATGTATTTT TTTTTGTGTG GGAAGACTAA GATTCTGGGT CCTAATGTAA GTAAGAAGCC CTCTTCTCCT GTTCCATGAA 000720 000721 CACCATCCTT TTCTGTAACT TCTATTACAC AGTATAGTGG TTCTGTAAGT TCACACAGCC CAGGGAGATG CTGGCTGCCC 000800 000801 ACTCCCCTCA ACCCAGGCAA ATTCCTCGGG GTTAAAGTTA TCTACTGCAA GTGACGATCT CTGGGTTTTT CTGTGCCtgt 000880 000881 gtttgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtat gtgtCACTTT AAAAGGACTG GTCAGATGGT AGGGAGATGA 000960 000961 AAACAGGAGA TGCTATAAGA AAATAAACTT TTGGGGCGAA TACCATGTGA CTCTTTTTGT TTGTCATTTG TTGCTGTTCA 001040 001041 ATAGGAAATT GTAGTGATGA TGCTGTTTCT CACCATTCTG GGACTTGGTA GTGCTGTGTC ACTCACAATC TG |
Predicted Small Protein
Name | NONHSAT021557_smProtein_248:352 |
Length | 35 |
Molecular weight | 3744.1923 |
Aromaticity | 0.117647058824 |
Instability index | 74.3294117647 |
Isoelectric point | 4.22552490234 |
Runs | 6 |
Runs residual | 0.00967982129561 |
Runs probability | 0.023067184832 |
Amino acid sequence | MADSFEKRAGVPGGNTNSDCYDMPLFWNSCLLCT |
Secondary structure | LLLLHHHLLLLLLLLLLLLLLLLLLHHHHHEELL |
PRMN | - |
PiMo | - |