NONHSAT021618

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT021618

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3197 nt

Genomic location

chr11+:60784375..60787846

Exon number

2

Exons

60784375..60785485,60785761..60787846

Genome context

Sequence
000001 AACCTGAGAT TCCGAGCCCA GGCATATAAG ATGCAAGACT GAGAGTCCAC AGTGCTATAA CATTGAAATT AAAAGTCAGT 000080
000081 GGTACCCGGT TCAAAAGAGC TGACTCCAAG ATCCCAGACA CTCATATCCT CAAGACTCTA TAAATCTCTG ATTCTGAAAC 000160
000161 GTGAAGGTGC CACAGAGCCT GTGATGCAGT GATTCCAGAC CATCTGGGTT TCACTCTAGG AAGGCTTCTT GAAGGAGCAA 000240
000241 ACATCTGTCC TTCTCCTGCC CAGAGCTGCC AGGTCACAAG GACAGAACCA AGACTCTTGA TACCTCTCTA AGTAGCAGGA 000320
000321 GGGACAGCTG GGGCTGGGGG CTGGGGGGTT GTAGGGCACT AGAGTTTCTG TCCCCAGGCT AGATTAAGGC GAAGGCTCTG 000400
000401 CTGGATTGGG ATATGAACCT GGAATTTGAT GGGAAATGCT AAGCCCTCTC TGCCTCCGGA GTTGTCCTCC CACCCTATTC 000480
000481 AGCCTACCCA GGCCCCGGGA AATCCAGCCT CTTCTCCAGG CTCCTAAATG ATGAGGTTGA GCCTTCACCC CTCCCCACCA 000560
000561 CCGCCTCTGC TTGCAGATTC CCAGCGGCAT CGGGTCACAG ATGAGGAGGT CCAGCAAAGC AGGTTCCAGA TGCCACCCTT 000640
000641 GGAGGAAGGT GAGTCAGGAT GGGAAGGGGT GTGAATGGCA GTCCCACCTC CAGAGAGTAG CTCAGCTCAG CTTGAGACCT 000720
000721 TCCAGCAGGa acctccctca atgagtcttt cctgactttc acaaatccta taggcagtaa gtgctttctg aagtctgact 000800
000801 taaagccctc ttgctgcaCT GCTTCTTTCG TCACCATTCT CCCTTTCCTG CCTTAGGACT TGAAGAGTTG CATGCCTCCC 000880
000881 ACATCCCAAC TGCCAACCCT GGACACTGCA TTACAGACCC GCCATCCCTG GGCCCTCAGT ATCACCCGAG GAGCAACAGT 000960
000961 GAGTCGAGCA CCTCTTCAGG GGAGGATTAC TGCAATAGTC CCAAAAGCAA GCTGCCTCCA TGGAACCCCC AGGTGTTTTC 001040
001041 TTCAGAGAGG AGTTCCTTCC TGGAGCAGCC CCCAAACTTG GAGCTGGCCG GCACCCAGCC AGCCTTTTCA GCAGGGCCCC 001120
001121 CGGCTGATGA CAGCTCCAGC ACCTCATCCG GGGAGTGGTA CCAGAACTTC CAGCCACCAC CCCAGCCCCC TTCGGAGGAG 001200
001201 CAGTTTGGCT GTCCAGGTGC CAATATCTGG GGAAGGGATG TGGGAGGGGG ACAGAGAGGG ACTGGGGAGT AAATGAGTGG 001280
001281 GGAACTATTG GATGCATTCG CTCAAGGGGA AAAGGAGAAA GGAAGGGTAA AAGAAGAGAG GGAAAGTAAC TTTTTAAAAA 001360
001361 ACAAAGCAAg gccaggcatg gtagctcaag cctgtaatcc cagcacaagg caggaggatt gcttgaggcc aggaatttac 001440
001441 gactagcccc gggaacatag caagaccagt ctctacaaaa ctaaaaacta aatattagcc aagggtagca cgtgcctata 001520
001521 gtcccagctc ctcaggaggc tgaggtggga ggatcgtgtg agcccaggag atccaggctg cagtgagcta tgatcgtatc 001600
001601 actgtgtatc atgcccctgc agggtcagag caagaccctc tttctacaag aaaacaaaCA CAAGCACAAC AAGAATATGA 001680
001681 AGAGGTGGGG AAAATGGATG TGGACGGGAT GGagaaatag tcaaacaggt tgctttgata agaagtgagc tccctgtcag 001760
001761 tggaggcatt caagcagaag cagctggttg gctccttggg ggagactgtg gtagcagagg ggcttccaac attcaatCGT 001840
001841 CCACCGTGTC GTGCAGTGTG CCATTGTGGA GACCATAGCC CTGAACCAGA CAGACGAGGC TATTCCCTCA GTGCTGATGT 001920
001921 TCTAGTCAGG GACATGGCCG GAAGCAAGAT GATCAGATGG CTTCATGCAG CATCCCACGG GGATAGTGAT GTGGAGCCAG 002000
002001 AACCACTCAG CTCCGTCCTG TGGGGCAGCA GGGCAATGAC TGGGTCTCCC ACTAATCTGG GCCTCTCTGC CCACAGGGTC 002080
002081 CCCCAGCCCT CAGCCTGACT CCACCGACAA CGATGACTAC GATGACATCA GCGCAGCCTA GGCCGGGGCC AGCCGAGGCT 002160
002161 CCTGGGGTGG CTCTGACCCT CTGGCCTCCT GCTCTACCTA CTCCCTTTCC CCTTTCCCAC CCTCCCAGCT CACCTCCCCA 002240
002241 TGGAGCTGAG AGGCCTCCCT TGGAGAGATG GAAGGAAACG TTATACCTTG TACCCCTCGG TCTCCATCCA TCAAGCCAAA 002320
002321 CCTGCTGCCA CAGCCCTCCC CCGGCCCCAG ATAGCAGCCC CAGGGAGGAT gctgcctcca agaggtgtga gccctctgtc 002400
002401 tcggggatga acaagcagag tctgggctac ctcttgacag ctggtggagg ggagttgggg agctggactg gatgactctg 002480
002481 gaggcccctt ccaaACCTCA AGTGTCCGGC GCTTTGATTG CCTGAGTTTC TGACACTTCA GGGCCCAGAG GTCCTGCGAG 002560
002561 GGGCAGAACT GGACCCCCAT GCCAGTGCTG CTGCAGGAGG GCCCATATAC TAGGGTCTGC TGAGCTGTTG TCACTGATCG 002640
002641 GTGGGCGCTG GGGGGGTAGG GTAGCACACC AGCTGTCCCA GGCTTTGCTC CGGGCGGTAA CTGCACTTGG GCAGGGAATA 002720
002721 TAGCCTTCCT GGGCACAACT AGCTGACAAT GACAGGTTGA CTGTGTACCC CCAACCAAGG AGCTGGGGCC CAAGGCCAGT 002800
002801 CCTGCCCCAG AGACACTCCA AGTCCGCCAG GGGCACAGAC CAGTTCTGCA GTGACTGTCC CTGGACAATG GGTCTTTATT 002880
002881 CTGAGTTTCC TATGGTTTAC AAAGAGGGCC CCAGCCCAGC CCCACCACAG ATCCCAGAGA TAGGGGCCCA GTCTCCATGG 002960
002961 GGGCAAGGAG CATAGAGATG TTTTCCAGGA AGGGGCTCAG AAGCTGCACT AGGCCCCGAG TCCCCATGTG TCTCCTTGAA 003040
003041 TTGATGAGGA TGCTCCTGGG AGGGATGCGT GACTATGTGG TGTTGCACCC GGGGCTGCAA ACGTCTCCGT GCAGCCCCCA 003120
003121 GAGAGAGGCC CATGGGCTCA GACCAGGCTT TGTTGTCCTG CTCTGAGTAT CCTGAGATTA AACTGAATTG CTGAATG
[back to top]

Predicted Small Protein

Name NONHSAT021618_smProtein_1589:1747
Length 53
Molecular weight 6281.3699
Aromaticity 0.115384615385
Instability index 80.7788461538
Isoelectric point 10.239440918
Runs 9
Runs residual 0.0227075184702
Runs probability 0.0489116567548
Amino acid sequence MIVSLCIMPLQGQSKTLFLQENKHKHNKNMKRWGKWMWTGWRNSQTGCFDKK
Secondary structure LEEEEEEELLLLLLEEEEELLLLHHHHHHHHHHHHHHHHLLLLLLLLEEELL
PRMN -
PiMo -