NONHSAT022024
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT022024 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2274 nt |
Genomic location |
chr11+:64546318..64548591 |
Exon number |
1 |
Exons |
64546318..64548591 |
Genome context |
|
Sequence |
000001 CTCATTGGCT GCGGTGGTGG ACTCAATCAA TCTCGCCTGC GTTGTAGTGT CGCGGGATTG GCTGTCGCTG GTTCCAGCCT 000080
000081 TTTTCTACTC CCCTCCCCCA GGGGGCAGTT TCTCCGGGAT TAAGCGAGAG TCGCGGCGGA AAAGGCCCAG CCGGAACGAG 000160 000161 ATTTACGGCG GGGGAGTCCT GGAGCAGGAA GTGCGCATGC GTAGATGGAG CAAAACCGCC TCTCCACCCG TCTCCCTTCA 000240 000241 CCATCGACCC TTGGGTCCAG CAAGGAAGCC CTAAGTGACG TCAACCTTTG TTCCCATGGT AACGCAGAAC CTTGGGGCGG 000320 000321 GAGCAGGGGA GGGGCTGGCG CGCGCCGGAA AACCGGCTCA GTTGACGCTG CAGGTAAAAA GACTTCCTGT TTTTTTGGaa 000400 000401 aaaaaaaaaa aaaaaaaaaG TGACCCAAAA AGCTACGAAT AGAGACGACT TATCGAAGGA TTTAAAACAG TATTTGAACT 000480 000481 GATGCAACAA CATATTAGAT GAAAGGTAAC AGAAGGTTGT CAGTTCAAAA ATTACAAATA CACACTTCTA TTGGAATCTC 000560 000561 CACGGAGTTC AGAGGATTTA ATTAAATGAT CTTAAAATCG TATAAAACAA TAACTACggc cgggcgcggt ggctcacgcc 000640 000641 tgtaatccca gcactttgac aggccgaggc gggcgaatca caaggtcaga aggtcgagac cagcctgacc aacatggcga 000720 000721 aaccccgtct ctacgaaaaa tacaaaaatt agttgggtgt agtggtgcac tcctgcaatc ccagcttccc aggaggatga 000800 000801 ggcaagagaa tcgcttgaac ccgggaggcg gaggttgcag tgagccgaga tggggccact gcacttcagc ctgggtgaca 000880 000881 gagcgagact gtcaaaaata aaaataaaaa taaCTACTAC AGTACTGGGA AAACTTTACA AGACGGAGCA GGAGCTTGCC 000960 000961 TTTCCAGATG ACAAACATAG TATATAAAAC ACAATAGGCC AGTGCCAAGG CACtgggagg ccaaggcggg gggatcacct 001040 001041 gaggtcagga gttcgagacc aacctgacca acacggtgaa acccccgtct ctactaaaag tacaaaaatt agccgagcgt 001120 001121 ggtggcagac gcctataatc ccagcttctc aggaggctga ggcaggagaa ttgcttgaac ccaggaggcg gaggtgtagt 001200 001201 gagctgagat cgcaccactg tactccagcc tgggcaacag catgagactc cgtctcaaaa acaaaaaacc acaataataa 001280 001281 aacaaTATGA TATTGTTGGT AGGAAAGACA CATTAGTGCA ACAGAATCCG GAAATACCAC AAATGTAGTA TTTTATTTCA 001360 001361 ATCAGGAAAA GATGATTTCG TTGATAAATG GCGTAGAATC TTAAATTTAA ACAACAAAAC ATTTAGAATA TAATTTAGGA 001440 001441 GACTATAAGG GTATTCTAGG GGTTGAGAGA CTGCAAAGAC AGGAACCTCA AACTGTAAAA AGATATACTT GATTACCCCG 001520 001521 AAAATTAACA CTGATAaaag tcaagagaca atgatagatg aggaaaaaat atttgccata catgataaag agccaatacc 001600 001601 tgtaatatac aaatacatct taaaaactaa ttagaaaaaa ggcaaaaaca atagaaaatg agcaaaaaat aggaatggac 001680 001681 atgtctcaga agaacaaatc caaatagcca agaaatatga aagggtgcac aaccccTCTG CTGTGGTTTT TTAAAATAAA 001760 001761 TAGAAAAGAT GTTGGAACCC CCACAACACT TGAAACCTGG AGAGAGAGGT GACTGTGATC TCAGCCATgt atggttataa 001840 001841 ttttttctga gataataaat tagacctgct tgtttttctt gttctgtaca attattggag agaattaaac atgggacaaa 001920 001921 aacctgctgc cttcttaatg acccttctta tagataactt cccttttgtt gtcctgcttt acttagacca gatgacagca 002000 002001 aacccatgac tattacaccc tctgtaaaaa atgttaaatg tatgcctccc aaaaagaaac actgcttaca accaaattat 002080 002081 ttattattat tatttcaatt tgagacagag tctggctctg tcgcccaggc tggagtgcaa tggcacaatc tcggctcact 002160 002161 gcaccctctg cctcccagat tcaagcgatt ctcccacctc agcctcctga gtagccggga ttacagccac ctgccatcat 002240 002241 gcccagctaa ttgttacatt tttgtaaaga tgga |
Predicted Small Protein
Name | NONHSAT022024_smProtein_2030:2209 |
Length | 60 |
Molecular weight | 6619.4739 |
Aromaticity | 0.101694915254 |
Instability index | 77.7186440678 |
Isoelectric point | 7.65863037109 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0240338377593 |
Amino acid sequence | MLNVCLPKRNTAYNQIIYYYYFNLRQSLALSPRLECNGTISAHCTLCLPDSSDSPTSAS |
Secondary structure | LLLEELLLLLLHHHHHHHHHHHHHHHHHHLLLLEELLLEEEEEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |