NONHSAT023292
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023292 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1654 nt |
Genomic location |
chr11-:78135028..78140882 |
Exon number |
4 |
Exons |
78135028..78136241,78136383..78136451,78138355..78138576,78140746..78140882 |
Genome context |
|
Sequence |
000001 AGCCTGTGGT GGTTGCCGAA GAACTTTAAT TACAGTGTCA GAGTGTTCAG GGACAGTCCC AACTCCCTTC ATGTGAGGAT 000080
000081 TGCAGAAATG GGCTTGGATC GTATACAGAC AGCGTTATGA GGCATTGCTG AAGAACACAC AAATCTGCCT GGAGCTGTTT 000160 000161 CCTGAACACA GGACCAAAAG GCAGGAATCA AAAGTAGTAA TGAGTTTAGT TATCTGTCTG TTACTGAAGG TGACTTCTAG 000240 000241 GGCATCCTCC TGGCATTGCT TCTGGAATAC AGTGACTTAG ACTTATTCGG AAGAACATCT CTATGCTGTT CATCACATCG 000320 000321 CCAGCACCTA GCCCTGTGCC TGTGCATAGT AAATGCTCAG AAAAGAAAAA ACAACAAAGT TTCCAGCTCT TACTCTAGAT 000400 000401 TGACACTGGA CCTTGGAGAT GCTTGCAGCC ACTAAATGTA ATGCCACATG ATTGTTGACC CAACAATAAT CCAGTTAAAA 000480 000481 AACAGTCTTC AGAGTTACTA CATCATCAGA ATTAACCCTG ATTACATCAA ATTATGTTGA AACAGACCAC AGCTGTTTGC 000560 000561 CCTGTTGAAG CAACTGCTTG AGAGCTCCTC CGGAAGATAC ATCTGGGTGT CACTAAGATA CATTTTGGGT TTAGTTTTGT 000640 000641 TTCTCAACAC AAATGTAGGA GGGAAACAAA CCCTGTTCTG CTGGGGTGCC TGGTGGGAGC TGAAAACCTT GTGATTCTCC 000720 000721 AGCAGTCAAA AGTCATCTCA ATTACCAAAG AGAAGGGAAC CTGAGATCTT TTGTTTCAGT TTTCTATAGG AAGGATGTAA 000800 000801 GAGGAAGGAA ATTCAAATCT GTTGAGTATT GCTCTTGCCA GCAAAAAGAA GTGGAACTGA CTAGTGAGAT GGTGGTGAGA 000880 000881 TTTTCTTTGG TGGCTGTGTG CAGTGGTATC AACCCAGGAG AGTAGACTGT TCAATTGTGA AGAATTTTGC AAGATGGTTG 000960 000961 TTAAAGTAGA ACATCGTTAA AATTAAGTTG TAATAAAAAA AGGGAAATAA GCATTGGAAA AGATGTGGAC AGATTGGAAC 001040 001041 CCTCATACAT TGCTGATGGG AATGTAAAAT GGTGTAGCCA CTGTGGAAAA AAGGTCAGCA GTTCCTTAAA AAGTTAAACA 001120 001121 GTGTCACCAT ATGACTCAGC ATTTTCACTC CTAGATAAAT ACGTAGATTG AAAACGTATG TCCACACAAA AACTTGTACA 001200 001201 GGAATGATCG CAACAGCATT ATTCATAATA GCCAAAAAGT GGAAACAACT GTAATGTTCA TCAGCTGATG AATGGATAAA 001280 001281 ATGCGGTATA TAAAGAACTG TCAAGTGCTT CAACATGGAT GAAACTTGAA AACATTATAC AAAGCGAAAG AGGTTAGACA 001360 001361 CACAGGTCAC ATATTGTATG AATATGGTTA TGTGAAATGT CTAGAATTGG CAAATCCATA GAGATGAAAA GTAGGTTAGC 001440 001441 GGTTGCCAGC TGATGGGATT GGGGGAATGG AGAGTTGCTA ATGGATATGG TGTTTCTTTT GGGGTAATGA AAATGTTCTG 001520 001521 GAATTAGATA GCTGTGGTGG TTGTCAAAGT TGATGAATAT ATTAGAAACC ATGAATTATA AACTTTAACA TGGTGACTTT 001600 001601 TGTGATACGT GAATATCTTA ATTAAAAATT AAGTTATATA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT023292_smProtein_302:397 |
Length | 32 |
Molecular weight | 3470.111 |
Aromaticity | 0.0645161290323 |
Instability index | 109.529032258 |
Isoelectric point | 9.62847900391 |
Runs | 5 |
Runs residual | 0.0399865591398 |
Runs probability | 0.0283872107401 |
Amino acid sequence | MLFITSPAPSPVPVHSKCSEKKKQQSFQLLL |
Secondary structure | LEEEELLLLLLLLLLLLLHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |