NONHSAT023509

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023509

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

937 nt

Genomic location

chr11+:86667442..86711766

Exon number

3

Exons

86667442..86667484,86669024..86669068,86710918..86711766

Genome context

Sequence
000001 CTTCTGCTTC GGCTCCTAGG GATCTGGGGA TCATGTGACC CAGaaactga tgctctgaga ggccaagcag tttgcccaag 000080
000081 attacacaGT CATAGCCGTG CCTGGGAGAA CCTTCTCTTC AACTCTGCCG CACCACTGTC AAGCTCACCT TTCTTCTAAG 000160
000161 GTTTTATTTT AGAGTTAACA TCCTCCAAAA AGCCTTCCTC AGGAGTTGAA GGTGCCCCTA ATATCACAGC CATGGCATCC 000240
000241 TGTACACTGG ACCTTATTGT CTGTCTGCCT GTTGTACCTT GTATGAGTCT ATAAGCAAAA CCTATAAGAA GCCACATCTG 000320
000321 GCTATTCTAT GTACTCAAAA AATAATTGGC AAGTGAAAGA ATGAGGAAAA GGAGAAAAAA TTCAGAAGGC CCCTACCCCT 000400
000401 TCCAATGGGT CAAGTCAGGA ATTTCCTACC TGCATGTGAT TCCCTGTGTC CTAGAGGGTT TTATTTACTC CTCAGACCTT 000480
000481 GGAAACTGTT AACCAGAGTC TCTGTTTGGA GATCTTATCT GTGTGCTTCT CCATGGGTGT TGTTTCCCTG TCTCTGCAGC 000560
000561 CATGCATTCC TCAGCTCTTT AAGTGGTGGA GCCTGTCTGC CTGGATAGAG TGCAAAAGCT ACAGTGTAAT CTTGCTTTCT 000640
000641 TTCAGGGCCA CTGACCAGAG GAAATAAAAA CTGGACTGAT TGGGCTCTCC TGATGTAGAC CAGCCAGTGG CCCTCTAAGT 000720
000721 TTCCTTCTAT GTTTAAAATT CCTTATCTGA CATTGCTAGC TGATCAGCAG GCCCACAGGT CAGCTGAGGG CTTATCTCCA 000800
000801 GGGCTGGAGC TTCAAAGAGA TACATGCACA CGACTCCCCT GGGTCAGATG GGCTGTGTCA CAGTGAGTTG GGGATAATTT 000880
000881 GGGATCAGTC AACATAACAC ACATAACACA ACCCATTAAT TTTTTTTTTC AAAAAGC
[back to top]

Predicted Small Protein

Name NONHSAT023509_smProtein_404:607
Length 68
Molecular weight 7462.8537
Aromaticity 0.134328358209
Instability index 67.5807462687
Isoelectric point 9.17816162109
Runs 12
Runs residual 0.0357896381965
Runs probability 0.0386931048697
Amino acid sequence MGQVRNFLPACDSLCPRGFYLLLRPWKLLTRVSVWRSYLCASPWVLFPCLCSHAFLSSLS
GGACLPG
Secondary structure LLLLLLLLLLLLLLLLLLLEEEELLHHHHHEEEEHHHEEELLLEEEELLLLLHHHHHLLL
LLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLL
LLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooo
ooooooo