NONHSAT023536
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023536 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2134 nt |
Genomic location |
chr11-:87898747..87900859 |
Exon number |
1 |
Exons |
87898747..87900859 |
Genome context |
|
Sequence |
000001 CTTTGAAAAT AATTCGGATT TTAACTTCTA CTGTTCTCTC CTTCCTTTCA TTGCCCACTC TCAAGTACTA ATTAAATTTT 000080
000081 GTCTTTTCTA CCTTATAAAA TAAATATCTC ATCCATCTTT TCAATAGCCA CATCTTCTTC ACAACTCACC GGAACTGTTG 000160 000161 CAGCAGTTGC CTCCTGCCCA TCCCCTCCTC CAGCTTCCCT GCCAATCAGT TTGTAATCGA CAGTGGTGAT ACCCCTCATC 000240 000241 ATGGTGTTGT TCTCCAGTTG ATATTCTCAT CTGGGACCCA TCACTGGAGC CACAGCATTT TTAGAATTAA AGGCTGAACT 000320 000321 TTTTAGCATG ACAGTCACGA CCATCATAAC TGTCACTCAT TTGTCATTCA GTCTTATCTC TCACATCTAT GATTTTTACA 000400 000401 TTCCAGATAT CTTACAGTGG CCCCAGTATA CCTACCTTCC CCTTTATGCT GTGGCTCACA CAGGTGTCTC TAGCTAAAAA 000480 000481 AAAACACCTT CCTCTTGTTA ACATAGATAA CTCCTATGGG TCCTTTTCAC TCTATCAATA TCACCTCCTC CAGAATGTCT 000560 000561 GTTGAAACCA TGAGACTCAG GGAAACACTT TTTCTGCTCC CATAAAGTTC CATGATTACT CCAGATAGAA ATAGTTTACT 000640 000641 ATTGCATTGG AATGTCTTTT TCCTCCAAAG TGTATCCCTG GGTCCTAACA TAGTATTTGG ACATGTGGTA GGAACTCAAG 000720 000721 TAGTATTTGT TCAATAAAGT TTTTCAGTCA ACTATTGTAT CAATGCCTTA ATTCTAAGAC ATATCATTGA TCTAAACATT 000800 000801 TCTTCAATAA AAAATAGACT TCTGTTCATG ATTGAAAAAC TTCACAACTT TATAAACATT AATATATAAA AGTATAATTT 000880 000881 AGAATTGAGA AATATGGCAA CCACTTTTCT TAAGGAGACA TTCTATTTTT TTTCCAACCA TGAAAACTGG GAAATGTCCT 000960 000961 TAAATACCAT TCTTAAAAGC TGTGTTTTTG CATTTAACAG TCTCCATAAT TTGAAGTGAA ATGTCATTCA TTTGGATGTC 001040 001041 AAATGGCAAA ACTATATCTT TTTTAAAATT TAAGCGTATA TTATATAAAA TAATAACTTC GTGAAAGGTA ATTTTACAGA 001120 001121 ATTAAAACCC TGAGTACTCA TCAAAACCAT ATCAGTCATT TTATGGATGA GCAAGCTTGA TCTGGAAGGG AGGTGACATT 001200 001201 AGTTTCTCAG GCCCACAGAG CTTGTTAGTG GTAGAATTAG AACCAGAACA CAAGATTACC TGGCTTATTA CCAAGGAAGC 001280 001281 TTGAATAATT AAAAACGTAT TTTTTAATAC TAGGTGTTTG GGTGCTGTCT TCAGCATTGA GTTATAATGA TGATCAAATT 001360 001361 GGGAAGGCAC CCAGCCCTGT GGAAGTTCGT GCAGTGGAGA AGAGGAGATA ATGGCATAGC AGTGGAGACA CCCAAAGTCA 001440 001441 TCCACAGTTT GGCTTTAAAT AGCATTTCTA ATATCATTTT CTCCCTCCCT CCATGATGAG GTCTAAATTT CAACCATTTG 001520 001521 AACTCCTTGC TATTCCTGGT TCATTTCCAT GCTTATTGCC TCTGAGCCTT TGCTCCTGCT TGCCCTGCTG GTTCATGTCT 001600 001601 GCTGGTTCAT GTGTCCTTCC CTTTGGAAGC ACATCCAAAT CCTACCTGAT GTCTAAGACC TATCTGAAAA GGCAGCTCCT 001680 001681 CTACAGAGAC TTTCCTAGTT CTCTCTGTCA GTAGTAACTT CTTCCTCCCT TGAGTCCCAT ACAACTTTTC TTTCCCTTGT 001760 001761 TTGTAGCACT TCTCTAGTTA AGCTTTGTGT TACAGTTATT TTCTATCTAT CCAAATTTCC TTCATGATTT TTAGTAAATC 001840 001841 CTGCTGTGAG TTATTTGCTG CATAATTTAA TGAAATTACT GTAGAGTCAG CAAAGAAGTA GAGAAGAAAA AACACCAAGA 001920 001921 ATGAGGAGAA CCTAGCAAGG GCAGGCTTTT GGAAGCAAGA GGTAGATAAT TTAATAAAAG GATAGTTAAT AGTTTCAAAT 002000 002001 GTGTTATGAC TTTTTGCTCT GAGTCTCTAC TTTTTGTAGT TTGTGTTATT CTGATGTATT ATTTAACCTT TGTTCCTTAT 002080 002081 CACTTTTATT TAAATATAAC TTTCAATTTG TTTTCAAAAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT023536_smProtein_1346:1495 |
Length | 50 |
Molecular weight | 5553.5538 |
Aromaticity | 0.0816326530612 |
Instability index | 40.6204081633 |
Isoelectric point | 11.0000610352 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0466643113703 |
Amino acid sequence | MMIKLGRHPALWKFVQWRRGDNGIAVETPKVIHSLALNSISNIIFSLPP |
Secondary structure | LLLLLLLLHHHHHHHHHHHLLLLEEEELLHHHHHHHHLLLLHHHLLLLL |
PRMN | - |
PiMo | - |