NONHSAT023666
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023666 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1710 nt |
Genomic location |
chr11-:93463449..93467827 |
Exon number |
7 |
Exons |
93463449..93463613,93463843..93463878,93464316..93464382,93464919..93464965,93465410..93465457,93466253..93466287,93466516..93467827 |
Genome context |
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Sequence |
000001 GGCTTTTATC TTGAGAACAT GGTGTCTGGA GTTAAAGGTA TGTCTCAATT TGAGTTTTCA CATCATATTT GTTTATGTGT 000080
000081 AGGAAACAGT ATGTTGTCAG AGCAAGTTTC ATTTTATTCA GGGACATTTC TACCATGCTT TTAATTCCCA TTTATACTGA 000160 000161 TTTCTGAAAA GAAGAATCCT AGATTCACAC ATTTTATAGT GATGTGTCAG ATTCATTTTA GTTGCAAGCA TTAGAGGGTC 000240 000241 CTGAATTTGT TAGTTTGTAG CAATAATCAG AACTTTGGAT TTCCTACTTG AAGCCTACAG CATTATTTTG AATTAATGCA 000320 000321 CAATCTAAAA TGAGGCAGAG GATTTTATGG TTTAATGCAA AATATAGTAT AATAAAAGAT GATTACACAG GTCATAAGAA 000400 000401 TTCATAAATT TGAATGATGT AGAGTTTGAT TAAAAGTTAT ATAATGCCAA AGTCGTAACT TACAGGCACA TTATATTCCT 000480 000481 GTATTTTATA ATGGATGACA ATTAATTTTG AGCCAAGAAT TAAAATTTGC TGAAATCTTC GAATTGGGAA AACAACATCC 000560 000561 TCTGTTGCAA TACTGAAGTT CATAACAACA GTTAGACTTT AAACTTAAAT CTTAAGTTTA AATCTTTTTC CTTTGGTTCA 000640 000641 TGTAAAGGAG CTACTTGATG TTACTTTTTA TTTATCATTC CTCTGGCTCC TAAGCACAAC GTGATTGTGA AATTATTGTT 000720 000721 TTTGTGATTA ACGTAGTAGG AAGTTTCTGC AGTTGGCAAT ATTGTAAGAG CATATTGCAG TTTCTGCTCA TAATTTCTTT 000800 000801 CCTATGGAGT GTTAGACTTT GTTATTTATG TGtataaata ctagctggac acagtggtgc ctgtggtccc cagctactct 000880 000881 ggaggctaag gcaggagaaa cacttgagcc cagcggtttg aggctacagt gagatgtgat cctgccacat ctcactgtag 000960 000961 cctCGAACCC CTGGGCTCAA GTGATTCAGC AAGAATCACA CGATTTTTAA AAGACATGGC AGATCCTGTG TCTTTAAAAA 001040 001041 AAAATCAAAA CCTTGTAAAT AGTGGTTGAG GTCTATCCCG ATGGGGCTTT TCCTGTAGCC TGCACATCGT TGGAAACGCC 001120 001121 TCATAGAGTA ACTCTGTGGT TTTACTTTAC TCACAGGACT ATTGTTAGAT CTGTGGGAAG GAATTACAAG ACAGTTGCTA 001200 001201 AAAGTTTGAA AAAGACGGTT GCTAAACGTT ATGAAAAACC AGATAATCTA CTTTTTTACC TTAGGTATTG GCATACTCCA 001280 001281 CACATCTGTA CCATTCTTGA GTGATCGCTT AGGAATGAAT GTGATTTGAA CTCATTCATG TTGAGAGGGT GTCAAATTGA 001360 001361 GAACCAGGTA GATCCCCACC ACCTACAGTA AAAAGGACCC TAAAGTAAAT TGGTTGAAGA AATTAGATCC CAAAGATTCT 001440 001441 TGGTGAATTT TGAAGTCTTC ATCAGTATAT CCATATTAAA ACGAGATGAC AGAAGCCAAA GTAATTATGG GCTGACAGGA 001520 001521 CAACTGGATC AGTTTCATTA AAAAGGGCAA ACTTGAAGAT AAATCTTTTG ACTCCAGCTC TTTAGAGGAT CTAAAGTGAC 001600 001601 CTTGATGGAC AGTGGAAGAA ATCACAACAT GGAATTCCTC GAATAACAAT TTATTGACTT TAAATAATTT TGTCTAATGC 001680 001681 TACATATACA CAATTAAAAA ACCTTTACAC |
Predicted Small Protein
Name | NONHSAT023666_smProtein_827:931 |
Length | 35 |
Molecular weight | 3822.3476 |
Aromaticity | 0.0882352941176 |
Instability index | 56.1529411765 |
Isoelectric point | 4.78338623047 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0243016125369 |
Amino acid sequence | MCINTSWTQWCLWSPATLEAKAGETLEPSGLRLQ |
Secondary structure | LEELLLHHHHHHLLHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |