NONHSAT024396
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024396 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2954 nt |
Genomic location |
chr11-:117089840..117093779 |
Exon number |
3 |
Exons |
117089840..117089880,117090307..117090474,117091035..117093779 |
Genome context |
|
Sequence |
000001 ATGCCACCCT TGGAGTAGTA GACTCGGGGA CTCTGAATAC ATCTTGGGAA TGCTTTTATC TTAGAAATTT GGATTTAGGA 000080
000081 CGAATATACA TATTTTTAGA AACTAAGTGT CACATGGggc caaacatggt ggctcactcc tgtaatccca gcactttggg 000160 000161 aggccaaggc ggatggatca cttgaggtca ggagttcaag accagcctgg ccaacatggt gaaaccctgt ctctactaaa 000240 000241 aatacaaaaa ttagcctggt gtggtggcgg gcatctgtaa tcccagctac ttgggaggct gaggcaggag aatcgcttga 000320 000321 aacaaggagg cggaggttac agtgagccaa gattgcacca ctgtactcca gcctgggtga cagaacaaga ctccttctca 000400 000401 aaaaaaaaaa agaaaCTAAG TGTCACATGG ATTAAACAAC TTTTTCACAC TCAAGGAAAT GCACAAACAA CTTCTTTGCA 000480 000481 GTGTCTTCCT TTGGTAAAAT TTGGGCTTTT GCTAATTTCT GTGGACTTAA AAAAAACTCC TAATTCCATT GCCCTTCAGC 000560 000561 TCTTAGGTAA ATACTGTGAG TTCTGGTCAT GTGCATCTTC AGGAGGAAAG CTAGTCTGGT TGTCGTTTTT ATGGGATGAG 000640 000641 TGGGAAGAGG AGTGGGGGAA TGTCTCATGT CAACACCAGA GAGAGCTCTT TCTCTGGAGC TATAATTGGA GCCATAGCAA 000720 000721 ATGAAATTCG AGCAGGGTCA TGGAGCTTCT CTAACCTGTG GAACCCATTT AAAGAATTTG AAGACGATCG CCTACACCCA 000800 000801 GCTGGGCTTA GCGCCATCCC AGCAGGTTTA AGGCAGGCCT CTAGACCATC TTCCTAGAGC TCCCTGCCTG TCCCTGTTGC 000880 000881 CCGCAACCAT ATAGTGTGGG CATAGGAGGC TCTAGGCAGG AGCTGGGCTG GAGCCAGGTG GTATCAAATT TCTCCAGTGG 000960 000961 CTGAGTCGGG AGATCTCTCT GGGGCCATTG GGAATTAGGC TGCTTTGTCT TCCTGCTGGG TCAAATTTAT TTTCCAAAAC 001040 001041 TAAAATTTTG TTATGCCAAT AAATGACTTC TGGTCAACAC AATGTTCCAA GGCTCTGTGC CAGTTGACCC CTACTACCCC 001120 001121 CTCCTCCCAG CCCCAGGGAG AAGAGAAAAG GGAGTGGACT AAAGTAGAGA GGGAAGAGAG GCTGGGCTGT GTGCACAGAG 001200 001201 GGCACCCACT GCAGGCCAGG CTGGGTTAGG AGGAAGAACA GGAACATACC AAACTCCACC CTCTAGCAGA ACTCTAGGGA 001280 001281 ACCCAGCTCG CCCTGCCCAG GCCAGGGACC TAAGAAGGTT CTACAACATA ATTGTCACTC TTGCTCTGCT GTACCTGGCC 001360 001361 TTTCTCATTT TAACTCACCT CAGCTTCTCA CCCTCACCAC CCTCTTCCAT CTGAACTGTA ATTTGCCCAG AAATGAAGAG 001440 001441 AGAGTGTGTT TAGCAGAGTT CCCATCTTTG GAATGTCCTT GCTATGGAAA CTTCTTGTTG CCAGTTTCTA GTCAATGACC 001520 001521 AGGGCAGCTG GGTAGAGCTG TCTTTCTGAG GGCAGAGGCT GGGGGCATAT GCTTCCCACC ATTTGGCTCC CTGGGGAAGC 001600 001601 AAAGCTTCTC TGGACTTTTC AATGCCTGCC TGTGGCTCCT GCCACCATAG ACAAGTTCGT GGGCTTCACA GCCACACTTC 001680 001681 AGACTATCAC TGCAAGGCTG TTTCCTTAAC AGGAAAAAAA ATCAACCCGC TCCCTTGCAT AAACCAGGCT CCCACTCTCA 001760 001761 TTGAGACAAC CACTTGGAGA GTGCTTTTCC CTTTTTTTTC TGGGAGTGCG CCATGGCTGG GTGAAAATTA CATCTCTTGG 001840 001841 CAGCTGCTCT AACAGCTGGG AGGGAAGCAG TGAGTACAGT GGAGAAAGGG CAGCTCTTGG CAGAAGTCGC CACCCTGGTA 001920 001921 TCTGACCCAG AAGAGAAGTT TGGAAGAAAG AAATTCTCCG GTGTTAGCAC TGACACCATG GGCCAACGAT CCAAGTGCCA 002000 002001 TAGAGTGGAG CAGATTTAGG CAGGGCCCGC CTCAGCTAAA CCCTCTGAGT CTCCAGGGGT GATGACAGCC CCAAAAGAGC 002080 002081 TCGATGCCAG GCAGTCACTG CCTCCCCTTG CCCCATTCTC GCTCCCCACC TCAGAACCAC ACAGAGAGAA GGGGTTTCAT 002160 002161 GGCATCTGGC CCAGAGCAGT GAGGCAGCTT GTCCTGTTGA GAGCTGTAGA GCCGGGCAGG CGGGCCTTAT AGACACTGAG 002240 002241 TCCATGCAGG GCTCGGGGGT GGGCAAGGAC ACAGTCCTCT CTTGCTGGAA CACACTCCCT GTGTTCACGC CGACATCATT 002320 002321 CCAGCCCCTG TCGCGGAGCT GCCAAATTGG ATTTCCTTGA ATAGTGCCGT CAGTGTTGTC CCAGCTCCAG CTGGGCCCAG 002400 002401 TAGCTCCCCT GGCCACTTCC TCTGTCTAGC TTGGTTGTGG GGGTTGAAGG GTTTGGAGTT GGGAGTTGGG ATAGAGAATT 002480 002481 TAGGAATGGG AGCAAGAATA TTAGGAGCAA AAATCGGGAG GCCCCCCCAT ggtggctcat gcctgttaat cccgacactt 002560 002561 tgggaggcca aggcaggaag attgcttgag gccaagagtt cgagaccagc ctgggcaaca tagtgagatg ctgtctctac 002640 002641 aaaaaataag aatattagtg tggtgcagtg gtacacgcct gtagtcccag ctacatggga agctgaagca ggaggatcgc 002720 002721 tggaacccag gagttcgagg ctgtgGTGAC CACTGACTGG GACCTTCAGA AGGGCACTGG CTGCACTGAG GGCCACACAG 002800 002801 GGACCTCAGC TGCAGCGCCT CTGGCAGCTG GCATGATAGC CTTAATGCTG CAGGTGCGGC CCTGCCTCAC GTGGCGTGAC 002880 002881 GTCCAGCACA TCATTGTCTT CACAGCCACC CGGTATGAGG ATCGCCGTGC AGAGTGGGTC ACCAACGAGG CAGG |
Predicted Small Protein
Name | NONHSAT024396_smProtein_635:856 |
Length | 74 |
Molecular weight | 7804.5827 |
Aromaticity | 0.0821917808219 |
Instability index | 64.3821917808 |
Isoelectric point | 9.95465087891 |
Runs | 7 |
Runs residual | 0.0482545293858 |
Runs probability | 0.0148509854392 |
Amino acid sequence | MSGKRSGGMSHVNTRESSFSGAIIGAIANEIRAGSWSFSNLWNPFKEFEDDRLHPAGLSA IPAGLRQASRPSS |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLLLLL LLLLHHHLLLLLL |
PRMN | - |
PiMo | - |