NONHSAT024449
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024449 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2435 nt |
Genomic location |
chr11-:118097406..118099840 |
Exon number |
1 |
Exons |
118097406..118099840 |
Genome context |
|
Sequence |
000001 GAGGCAGAGT CTCACTCTGT CGCCAGGCTG GAGTGCAGTG GTGTGATCTT GGCTCACTGC AACCTCTGCC TCCTGGGTTC 000080
000081 AAGCGATTCT TGTGCCTCAG CCTCTCGAGT AGCTGGGATT ACAGGCATGC GCCACCACAC CCAGCTAATT TTTGTGTTTT 000160 000161 TAGTAGAGAC GGGGTTTCAC CATTTTGGCC AGGATGGTCT CAATCCCCTG ACCTCGTGAT CCACCTGCCT CGGCCTCCCA 000240 000241 AAGTGTTGGG ATTACAGGCA TGAGCCACTG TGCTTGGCCT GTTATTTTAT TTTCTTATAA CTACAACTTT TCTTCTTGAA 000320 000321 TTTTCAGGTC AGAGGCAAGA AAAACTCTTT ACAGGTTTTT AGTGGGGGGC TTATGGAGTA TTTCAGGAGT TCTTTGCAAA 000400 000401 TTAAATCATC TTTTCACTTG TATTGTTTTT CAAAACTTTG TTGATTTCTA AAATGTGCCA ACTGTGAGTA AACTATGGTA 000480 000481 TTTGCAAGTG GTTTTTACAT AATATTTGAG ATGAGGAAGT GAGATTGTGC ATGACATACT TCTCCTTTGT ATTCTCTCAG 000560 000561 TGCCTTACAG CAGGTTACTC CATTCTGCTA TGACAACTTG TTTCAAATGT TAATTTACAT AGGATTTTTT ATAAGCCATT 000640 000641 AAGGCATATG TATAGTATAT CAGTAAAGAT GGATGGTGCA TATATAAATA GTCTTCTGTA ATAGTGATTG GATTTACTTC 000720 000721 TCAATTATGA GAGACAAAAA TTATCCCCTC ACCTGTCTCT ATTCTTTCAA CAGGTTGATC CCTTTTCATG ATTTTTCATT 000800 000801 AGGTGGTTCA GGAAGTTTCC ATATTACAGC GCTTCAGACT GTATATGTTA GTTTAAAAAT CACTTTTCTC TCTCTCAACT 000880 000881 TCTTTCTTTT TTTTTTGAAG ACTTAATTTA AAAAATTTGG GTTGTTAGAT CCGTATCATA GATTTGGCCT AGCCTCTTCT 000960 000961 GTTAACCTAG TCCACAGATG AGCGAATCTG GTTAGTTGAA GGACATTGTG ATTTGACTCT GGTCACGCGA GGAAGTAGAA 001040 001041 GGGCAAAGAC AGGACCGGCA GTTTACATTT CCAGTGGTTA AACCTCACGG TACTTTGGGA CTGCTTGTTA ACTTTTGTGG 001120 001121 TTGTCTGAGG CCAATCTAAC GTGACCATTT CTGACACCTC AACAGAGAGA GGAAAGCAAC TTGAGCAATG AGAGTAAATA 001200 001201 ACTTGGGCTC TCAGAGATTT GAAGATAGAG ATCTCATTGT GAGGGGGACT ATTTTGCAGG TCCTCATTTC TCCAAGAAAG 001280 001281 AGATGGTGTT ACAGGAACCC ACTGAAAGCC ATATCCCATT AAATGAGGAA CTAATTTTGG CTGGGCCTTC TTGTAATGTC 001360 001361 CTCGCAGGTG TGTTGTGAAG ATTAATGCAG GGTAGTATGT TTGTAGATTG ACACCTAGTC TAAACTTGAG GTAATTGGTG 001440 001441 CTCTGTGAAT ACTCAGTCGT GTTCTTTTAT AGCCTTAATC ATGATTTGAA CTAGTCCCTT GCTTTTTAAA TGACTGAATG 001520 001521 AAGTCCTTCG TGGTAAGGGA GTACGTTGAT AACTTAGTTT ACTATATGGG TTTGTGGTCG CATCCCAGTC ATCAGCTGCT 001600 001601 ATCATTTTCC TTCTTCATCC CTTATACTGA GATTTGGGTT ACAGCTTTTT ATTCTTCGAA GGATCACAAA GCAGTGTACA 001680 001681 GACACCTGCC TTCTTTAAGG ATGAAAGGAA GATAAAGTGG TCTTTTTTTG TTTACTTATT TGTTTCACCT CTTGTTTGAG 001760 001761 TAACTTCTAA GGTGCTATTC TCTCTCTCTT TTTGCTACCT CATGAGCTCT TGTCACAGCC ATGGAAACCA GCCTCGTTTA 001840 001841 GAAAGGGAAC TTAGTTCAGA AGGGGTTAAA AGCCTTCCAG AATTTTTCTT TAGCTGCTGA AGTTTTTACA TGTGGTTACA 001920 001921 TGACTTTAAG TTTTATGCAT TACGCTCTTA ATTCTATTAC AAAATGTGGA CTCACCAATT GCTTTGTGTT TTCCATGTGA 002000 002001 CCTGTTACTT CAGGCTACTT GGGGAACATC TTAGTCCTCT GTAGCTCCTG AACCCAGCAC TGGTGCTTCA AGAGAGAAGG 002080 002081 TAGCACGTCT TTGTTCAAAA CAAAACAAAA CGACACTTCT GGAGGCCACA TCCTGAATAT GAATGTTCTA CTAAGTCACT 002160 002161 CAGTTATGGT TCTAAAGGGA AACTGTAAGA AGACCCACAA GGAGTGGACC AAGACTATTA TTTAATTGCA CAACTTGAAA 002240 002241 CTTTGCTGCC AGAAGAGGCA GCTCCATTCC TTTGACTCCA GTGTTGGGCT GTTAACTGCT GCACCTCATT GCCTTTTTTT 002320 002321 GTTTTTGTTT TTGTTTTGTA GGAGGGTAGG CACTGTTGGG CCATATGCAC AAATATTGTA ACTCTTGGTA TCTTTACTGC 002400 002401 ATCATAGTCA ATAAACTTCT TTGTACCCTT TGGCT |
Predicted Small Protein
Name | NONHSAT024449_smProtein_1517:1714 |
Length | 66 |
Molecular weight | 7862.0321 |
Aromaticity | 0.2 |
Instability index | 41.1663076923 |
Isoelectric point | 9.62921142578 |
Runs | 11 |
Runs residual | 0.0189423076923 |
Runs probability | 0.0695829519359 |
Amino acid sequence | MKSFVVREYVDNLVYYMGLWSHPSHQLLSFSFFIPYTEIWVTAFYSSKDHKAVYRHLPSL RMKGR |
Secondary structure | LLEEEEEHHHHHHHEEEEEELLLLLLEEEEEEEELLEEEEEEEEEELLLLHHHHHHLLLL LLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiii iiiii |