NONHSAT025035
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025035 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2511 nt |
Genomic location |
chr11-:126804788..126807046 |
Exon number |
1 |
Exons |
126804788..126807046 |
Genome context |
|
Sequence |
000001 AGATGATGCT TGGATTGAAC TTGGTGGCTT CAAGTGTCTC TGCTTGATGT AAGTGTGAGG CTATGTCCTA GATAAATACA 000080
000081 ACAACAGCAG GAGGTATTCC TGAAAGACAC ATTCACCAGT AATGGGGTTA TGTTAAATTA ATCATAGGTA GTGTTCTTAG 000160 000161 TGTGTGCCCT CTGCATTCGT GTACCCTCCT GACATCCTTA ATAAGCATCT GCTATTCCTT AACAGCTTTA TTGAGGTATA 000240 000241 ATTTACATAC CATCACATTT ACTGTTTTAA CTTTGCAATT GAATGAATTT TAGTAAATTT ACACAGTTGT TCGGACATCA 000320 000321 CTACAATCTA GTTTTAGAAC AATTCCATCT CTCCCAAGTG ATCCCTCATG CCCATTTGCA GATCATCTGC ATTCCCACCC 000400 000401 ACTGCTGTGG GCAACTACAA TTCTATACTC TATTGCTAGA GATTTGTCTT TTCTGGACAT TTCGTATCAG TGGAATTTTA 000480 000481 CAATTTGTGG TCTTTTGTAT CTGGTTGCTT TCACTTAGTA TGGTTTTGAG GTGCATCCGT GTAGTAGCAT GCATCAATAT 000560 000561 GCATTCAATA TGCATTTGCT TTTTCTTTTT TTTTGCTGAA TAGCATTTTA TTGTACGGAT AGACCACATT TTGTATATTC 000640 000641 TTTTACCAGT CGATGGACAT TTAGATTTTT TTCCACTTTG TTGCTGTTAT GAATAATGCT GCCGTGAACA CTTGTGTACA 000720 000721 TGTCTTTGTG TGGACATATG TTTTCATTTC TCTTGGGCAG ACATCTAGGA GTGGAATTGC TGGATCATAT GGTAAATTTA 000800 000801 TGTTTTTAAG AAACTACTGA ACTATTTTCC AAAGTGGCTG TAACATTTAA CATTTCTACC AGCAATGTAT TGAGGGTTCC 000880 000881 AGTTTATTTA CATCCTTACC AACATCTGTT ATTTCTGTCT TTTTTATTAT AGCCATTCTA GTGGGTATGA AGTGGTATCT 000960 000961 CATTGTGGTT TTAATTTGTA TTTCCCCAGT GATTAATGAT GTTAAGCAGT TTTTTATGTG CTTATTAGCT ATTTGTATAT 001040 001041 CTTCTTTGGT GAAATGTCTT TTGAAGATTT TTTGCCCATT TTTGAAAATG TAGATTTAAT TTTTAGAGCA GCTTTAGGCT 001120 001121 CACAAGAGAT TGAACAGAAA GTACAGAGGT CCCATATATG ACCCCGCTCC TGACAAAGGC ACAGCCTCCC CCAGTATTGA 001200 001201 TATCTCACAC CAGCCAGAGT GGCCCATTTG TTACAACTGA TGGACCTCCA TTGACACATC ATTACCACCC GAAGTTTATA 001280 001281 ATTAACACTA AGATTCACTC TTAGTGCAGT ACATGTTATG GGTTTGAACA CATGTATAAT GACTTGCATC TACCACGTAG 001360 001361 TATCAAATAG GATAGATTCA CTGCCCTAAA AATCCTCTGT GCCCTACTTT TCATCTCTTC CTCCCCACAA ACCCTGGCAA 001440 001441 CCACTAATCT TTGTATTATT TCTATAATGT TGTCTTTTCC AGAATATCAT CTAGTTGGAA TCATATAGTA TGTGTAGCCT 001520 001521 TTTCAGATTG GCTTCTTTCA CTTGGTAATA AGCATTTCAG TTTCCTCTAT GCCTTTTATG GCTTAATAGC TCAGTTCTTT 001600 001601 TTAACACCAA ATAATATTCC AGTTGTCTGG ATGTACCACA GGTTATTTTT CCATTCACCT GCTGAAGGTC ATCTTGGTTG 001680 001681 CTTCCAAGTG TTGGCAACCG TGAATGAAAA TACTATAAAC ATCTGTGTGC AGGTTTTTGT GTGGACCTAC ATTTTTAACT 001760 001761 CATTTAGATA AATACCAAGG AGAATAACTG CTGGAACATA TAGTGAGAGT ATGTTTCTTT TCTTTTTTTT TTTTTTTTAA 001840 001841 CTGCCACACT GTCTTCCAAG TGGCTGTGCC ATTTTGCCTT CCCAGCAGCA GTGAATGAGA GGGCCTGTTG CTCCACATCC 001920 001921 TTGCCAGCAT TTGCTCTTGT CCTGTGTTCT GGATTTTGGT CATTATAATA AGTATGTAGT GGTATCTTAT TGTTGTTTTA 002000 002001 ATTTGAAATT CTCTCATGAC AAGCATTTTT TCATATGCAT ATTTGACATG CTTGTATATC TTTGGTGGTG TCTTTTGCTC 002080 002081 TTTTTTTTTT TTTTTTTTAA GACGGAGTCT TGCTCTATGG CCCAAGCTGG AAGCTGGAGT GCAGTGGTGT CACCCCGGCT 002160 002161 CACTGCAAGC TCCGACTCCG GTGTTCATGC CATTCCTCCA GAGTAGCTGG GACTACAGGC ACCCGCCACC ATGCCCAGCT 002240 002241 ATTTTTTGTA TTTTTAGTAG TCCCAGCACT TTGGGAGGCC GAGGCGGGCG GATCATGAGG TCAGGAGTTT GAGACCGGCC 002320 002321 TGGCCAGCAT GGTGAAATGC TGTCTCTATT GAAAATACAA AAAGAAAAAA AATTAGCCAG GCATGGTGGC ATGCACCTGT 002400 002401 AGTCCCAGCT ACTCAGGAGG CTGAGGTAGG AGAATTGCTT GAACTTGGCA GATGGAGGTT GCAGTGAGCC GAGATCATGC 002480 002481 CAGCCCGGGA GATAGTGCAA GACTCTATCT C |
Predicted Small Protein
Name | NONHSAT025035_smProtein_2015:2311 |
Length | 99 |
Molecular weight | 11055.8795 |
Aromaticity | 0.19387755102 |
Instability index | 76.4214285714 |
Isoelectric point | 9.25982666016 |
Runs | 15 |
Runs residual | 0.0140186915888 |
Runs probability | 0.039357004063 |
Amino acid sequence | MTSIFSYAYLTCLYIFGGVFCSFFFFFLRRSLALWPKLEAGVQWCHPGSLQAPTPVFMPF LQSSWDYRHPPPCPAIFCIFSSPSTLGGRGGRIMRSGV |
Secondary structure | LLLHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHLLLHHHLLLEEELLLLLLLLLLLELLL LLLLLLLLLLLLLLLEEEEELLLLLLLLLLLEEEEELL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |