NONHSAT025205

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT025205

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

5463 nt

Genomic location

chr11-:133167084..133172529

Exon number

1

Exons

133167084..133172529

Genome context

Sequence
000001 GTGCCATGTG AAATTTCTGT CATATACTGT TACCTGAAGT AGCCTTGCCC ACCACCCCAC CTGCCCTTTG AATGCCAGTG 000080
000081 TGAATCCTAC ATGTGTTCAC ACACCAGGTC ATTTCGCTTC TCTGTATGAA GCTGAATTAG TCCGTTCTCA CTTTGCTATG 000160
000161 AAGAAATACC CGAGGCTGGG TAATTTATAA AGGAATGAGA TTTAATTGAC TCACAGTTCC ACATGGCAGG GAAGGCCTCA 000240
000241 GGAAACTTAC AATCATGGTG GAAGGCACCT CTTCACAGGG TGGCAGGAGA GAGAATGAGA GCCGGCAGGG GAAATGACAG 000320
000321 ATGCTTACAA AACCAACAGA TCTCCCGAGA ACTCACTATC ATGAGAACAG CATGGGGGAA CCGCCCCTGT GATTCAATTA 000400
000401 CCTCCACCTG GTCCTGCCCT GGAAATGAGG GGATTATGGA GATTACAATT CAAGGTGAGA TCTGGGTGGG GACACAGAGC 000480
000481 CAAGCCATAT CAGAAGCTTT TAGCAGTTAT CTTAGCTCAC AATGGACTCT TCCTTCTCCT AATTTTTCTG ACACTTATAG 000560
000561 TCAGAATCAT GTAACTTAGC ACAATAAAGT CTTGCATTGA CCTTGGATTG ATTAACATCT TCTATGTCTT TCCAAGCTTT 000640
000641 TTATGTCTCC AACAAAATTA CGTATGTGGA CTAAATATTC TACTTTTTAC ATTTTCCAGT GCCTAGTATA TAGTAATTCA 000720
000721 CATTCATGGG TATTTGTAAT TTGAGTCCAT ATAGTTTCTG ACTATGGATC CAGAAGATGT CATTGGCTGA AATTATGTTA 000800
000801 ACTTTTTTTA ATGCCTCTTC ATACTATCTT GTATATGTTC AGTGTCCAAA TTAAGTTGTT GTCTGATTGT TTCCCCACCC 000880
000881 TCCACACATA AATATGAACA AACAAGCAGA CATTTACTCT GAAGGAGTCC AGGTACACTA CCTAAGCGCA TGTCAAAGAA 000960
000961 TTATTTTAAG TGAGACTTCC AGTTTCCCCC TCCGATTTTA TCAAAAAAGT TTACATAGAT ATTTCTTCTG AAATAAAGCC 001040
001041 AAGAAAGACT TAAAACCACA TTTACCTAAA CATATGGAAC ATGTCCTCAT CCCTAACAAA AGCTCTCAAT GCTATCAATT 001120
001121 AAAAAAATAC AACCTGGAAT TGAGACCTGT ATTCATTTTG GAACAAACCT CAAATTCGTA TTTTTGTGGT GAGACCAAAT 001200
001201 TGAAAACCTC ATCTTTAAGC AATAAATATC TCTGAGCAGA TTCTCTCTAC TTCAGCCACC AAAGTAATTC CTTGTTTCCA 001280
001281 AAATTTGTAG AAAAGCTTGT GAGCAAATTA TTTCTAAAAT GACAGACTTT TTCCTCTGTA CTTCAAAAAC TATATATTGC 001360
001361 ATGCCTACTC TAGGCATGGG ATTGTGTTAA TTGTACCATG GATGATGTAA CAAAGACTAA AATACCATGC ATATCTAGGG 001440
001441 TGACTATATA GTTTATCACC AAACTAGAAC TGTTTTGAGA GTGAAAGGAG AGTTGTTAGA ATCCTGCTAG GCTGATGAGC 001520
001521 ATAAACAAAA TTCTGCATGT GTAGCCACCC TGTACATCTG TGTCAGTTTC TTATGGCTAC TCTAACAATT ACCATAAACC 001600
001601 TGGTGGTTTG AAATAACATA AATTTATTCT GTGACAGTTC CAGAGGCCAG AAGTCCAAAA TTAGTATCAC TGAGCCAAAA 001680
001681 TCTCCATGTT GACTGGCTGT ACTCCTGGAG ACTCTCAGGA GAGTCCTTTT CTCCTCTCTT CCAGCTTCTG GCGGCTGCCC 001760
001761 ACATGCCTTG GCTTGTGCCC GCACCAATCC AGTCTCTGCC TATGTGGTAG CATTGCTTCC TCCTCTTCTG TCTTTATGAA 001840
001841 ATCACGCTCT GCCTCCCTCT TAAGGGAACA CTTGTGATGG TGTTCAGAGT CCACCAAAAT ATTCCAGGGC AATATCTCCA 001920
001921 TCTCCATGTT AACTTAACCA TAGCTGCAAA GACCCCTTCT CCTCATACAA AACGATGTTT ACAAATTCTA GGGAAAAAGG 002000
002001 CCTGATATCT TTAGAAGATA TTATTCCGCT CACCACACGA TTCCCATCTT TTAAAATTAG ACACCTCATC AGGAAGTATT 002080
002081 GTGATTTGGT GACACATGAG TGATATGGAC AATACTGTGC TGTAGAAGAA ACAAATCACT TGACCTTGAG GCACCCTTAC 002160
002161 CTTGAAAGAA TAGGCAGAAT TTGGAAAAAT ACAGAGGAAT GCATCACTGA CAGGTAAAGC ACAAGCAAAG GTTTGGAAGA 002240
002241 GGGGCTAAGC AAGGATGTTT GGGGGACAAA AAAGGAGACC ACCTTGCCTT GAATATAGAG TTCACACAAG AGCAGCAGGG 002320
002321 GAGAAGCATG AACGTCAGTT TGGCATCAGG GGGCTGGTTT TTCCTCATTC CAAGCTCTTC TCATTTTTCT ACTTTATTTA 002400
002401 CTTGAAAACT CTCTTTCTCC TTAATCTTTC AGTCAGTTAA TCTTTACACC TCCATGATCC TTCATTTCTT TTCCCCTTTG 002480
002481 ATGATTTCCG ATGCTCTGCT TCTGAACTCT TCCTAAGTTC TGCCATAGTG ATTCCCCTCT GTCTGTACTG CTGTTCCTAC 002560
002561 TGCTTTGCTT TGCAGCTCTT CTGCATTTGA CTGTGAGCTC ACTGAAAGAA AGGACCGTGG CATGTGCATC TTTGTGTCTC 002640
002641 CAGAATTTAA TTAGCACAGG GAGTAATTTA TAAGGGGTGA ATGAATCAGT ATGGAGATTT ATACCAAGGA CCCTCAACTT 002720
002721 CACTGAAGGT CTTTAATGAT GGTGCTGATG TTAGTGGTGG TCGTGGCGGT ATTTAATTAT TTTTTCTAGG TAGGGATCCC 002800
002801 TTCTTTCCTC CTCTTCCCGT TCACCTGCTC TTCATCACAG ACAAGTATGG AGCTCCTCAG GCACCATCCA AATTAGGGTC 002880
002881 ATCCTAATAA TTTGACCCCT TCATCTACTT AGGAGGAAAT ACTGAAATCC TCCCTAATAA AAAGCTAGGT ACAGTATGTT 002960
002961 CTGTCTGGAG ATATTCAGAG ATGGTATAAA TTATTTTCTT CTGGCAATTT CAGGTATGCT TGTCTCACTT TCTCATACGT 003040
003041 ATTAACTCAC TTTTAATAAT CTACCCATTT TCTCTTGTTC TGCCTTTAGG CAATTGGGAA ATAAGTGATT GGGCACTTGT 003120
003121 TCTTGATAAC TTGTGGATGG TTTTGGTTTC TGGTTGCTGT AATTAAAGGT GACTTAAGTA GAAGAAATTA GGTGTCTGCC 003200
003201 CACTAATAAG CAAGGTGATG TTCATAAGCT GCTTTGCCAC TATTGGCCTC AGAGCTTCAA CCCCAGCAAC TTCCATTAAA 003280
003281 GCCAGGGATT AACTATTAGT GCAGCACAGT GGAAGGAACC AGAAGAACAG TTCTTTGGGT CCCAGCAACA AATTACTTCT 003360
003361 GAATGAAACC TCTGATTAAT GGCTCCAGAG TTGCCTCTTT GTTTTGCATA ATTAAGTTTC ATGGAGTGTT ACAATGAACA 003440
003441 ACCTTGCCAT CACCCAGGTA GAAACAGCCA CCATTTATTT GGCCAGCAGT GTCAGAAAGT GCTGGGTGGT GAATAAGAAG 003520
003521 CATTTATGAG GGGATTAGGT GCATTTGGGT CATAATTGAA TAAGGCTATA ATTACTTTTC ATTAAAAAGC TACAAATAGG 003600
003601 ATGACCCTAT GATACTATAC CAAGTCCCCT TTCATTTTTT TTTTCCTGCT GATCTGGGTC TAAGAACTTC CTTCTCTAGT 003680
003681 CAAATAATGG CCATAATACA GAGAAATTTG TAGTTATATA TGAAAGTTGA CTGTTTCCTC TTTCTGCACC TCCAGCGCAT 003760
003761 ATCTTGTTTT ATGACATTTA TTATGGCCGC TTTTGTTATC ACACAAGCAG TCTGATATGC AATGTAGATG TCAAGTAAGC 003840
003841 TTGAGACTCT TGTAGCTGCC TGAGAAGAAA GTCAAGGTTC ATTGGGGCTA CTGGGAGACA ACAAAGTGTC TAGTACGTTG 003920
003921 TTGCTGGTGA GCAGGCCAGG AATCAACCAT TTGTCCATGT CAAGAGATTA AAACATGATC AAAAAATGTT TTCTTTATAG 004000
004001 TTTTTTTTCC CCTGTGGAAT GACATTTCTC TGACACAGTT ATTCCTTTGA CCAGTATCGT TTTGATGTTA AGGCAGAGAG 004080
004081 ACCAAGAGGA GCCATTGTAG GGATGGCATC CTCTGTTCTA GTCAAGTTTT CCTTGGGTCA ATAGAATTTT TTAAAAAATG 004160
004161 AATAATAGCA ACTACTTGTA TGGAGTTTTC TACATGCCAG GTACTTTTCT ATGCTCTTTA CTTGAACATA TTTATTTAAT 004240
004241 GAAGAATTTG CTCCAAATAT TTGATGATTT TTACCATTTT CTGTCTTTCT TACTTCCTTA TTTTTACCAT CCCTCTCTTC 004320
004321 CTGAATTTAT CTATTTCCTC TCTGCTCCTT TCTCCTGCTC TCCCTCCCTA TCTTTCTTCT TGGCTATCTT TATACTGTGT 004400
004401 CTGGGATTTG ATCAAGGGAG AAAGAGAAAG CAATATGAAA CCTGAAGAAC ACAATTCAAG CCCTGGAACT ACCACTAGAC 004480
004481 ATGAGTGTGA TTTTGAGCAA GCTGATGAAT CAAATTGGGC CCTATGTTGC TTATAAAGAA GAAGGAAAAG GAGGAGATGA 004560
004561 AGAAGGAGGA GTAAGAAGAG AAGCAGGAAG GAATGAAGAA GAAAGAAGGG GAGAAGGAGG AGAAGGGGGA GAAATAGAAG 004640
004641 GAAGAGGATG AGAAATTGGA GAAAGAAGGG GAGGAGGGAA CAGTAGTAAT ACCTATTCTA CCCATAGTAA AATGTTGCCA 004720
004721 TAAAAATCAA AGGAGACAGT GCCTATGAAA ATCCTCTGTA AATTGTAAAG AACTCTACGA ATTCAACTTT TTTTGCTGAC 004800
004801 CTCCTAATGG ATGTTTTCAG GAATTTTACT AAGATTTAGA GCCAGACATG TTTTTTAAAA GAGAGAGAGA TCATGCTCTA 004880
004881 GACAAATTGG GTGCCTCATT ATACACTTAC CAGGAGGAAA ATGCTGCCAT TCCTGGCTAA AAACCCATTT GTCTTGCAAA 004960
004961 TATCTATAAT GAACAGATTT TGGGATAAAT ACTATGTAAT CTGTGATGAC AGTTCTCTCA TTTCTTTTTT ATTAGTTCAA 005040
005041 TCTTCTCAGC ATCTGAACCA CATAGCTACA GAACCTCCAT AATCATTAAG GCAGCTGGGA CGTATGCATT TTTTCTCCTT 005120
005121 TCCTTGGCAC ATCACAGAGT CCCCAATCAG TCCCTTGTTA CAAGGCCTAT GTTCTAGTAG TAGTTAAATG CACCTGTATA 005200
005201 AGAATGCCAG AACAGAAAAG AAAACAAACA GCAGGGTGCA TGGCCTTTGC AACAAAGTTC CATTTTCACA ACTGACCTTT 005280
005281 CCCTGGGTAT TTAAAACTTG GGTTTTACTT GGAGCTTGTG GATAATTTGC ATTGCACTAA ACATCCCTTT GCTTAAAATA 005360
005361 GATAATCTCA GTGGAATATA AGGTGGTTGC AGTAAACTCT AACCCACCTT ATTCTCTATC CCTTTTCCCT TTGTCTTTCC 005440
005441 CTAGAAAAAA AAAAAAAAAA AAA
[back to top]

Predicted Small Protein

Name NONHSAT025205_smProtein_4157:4444
Length 96
Molecular weight 11346.1287
Aromaticity 0.242105263158
Instability index 69.6603157895
Isoelectric point 6.22918701172
Runs 9
Runs residual 0.0343141317862
Runs probability 0.0969597048028
Amino acid sequence MNNSNYLYGVFYMPGTFLCSLLEHIYLMKNLLQIFDDFYHFLSFLLPYFYHPSLPEFIYF
LSAPFSCSPSLSFFLAIFILCLGFDQGRKRKQYET
Secondary structure LLLLLEEEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHH
HLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLH
HHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooT
TTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii