NONHSAT025360
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025360 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2002 nt |
Genomic location |
chr12+:752514..754636 |
Exon number |
2 |
Exons |
752514..753003,753125..754636 |
Genome context |
|
Sequence |
000001 GGGAGGGTGG CGTTCCTGAG TCCGCGGAGG AAAGGGTCGC AGCTGCAGTC GCGCCAGCCC TCGGGCCTAC ATCCGCTCCG 000080
000081 CCGCGACGCG GCTCACAAAC TAGGGAGGGG AGAAGGGAAG AAAGACCCGA TTCGGGAACA CGGCTTTGTC CCTGGAACTG 000160 000161 TACCTCATGT CCCctcactt aatcctccca agacctgtgg ggcgtgtcgt cattttaggg ctggagatga ggaaaccgag 000240 000241 gctcggagag atgaagcgTT GTACGGCCAC CGAGCGGCTG CTTTGCAACG AAGCCAAAGC CAACGTTTTG TTCTTAGCGG 000320 000321 CGGTCGTTTG AGCCACGCCT CACCGCAACG AGTCTGCCAT CAGCCAAGAG GTCACATCTT TTCTGGAACT CGCTCCCCCC 000400 000401 TCACATCATG GGAGCAGTCA GTCTACTCTT CCAGTAGAAA CTGTTTTGCC ACTTTTGGGG GGAATCTTGA GCTACCAGct 000480 000481 catcgctcag atggagtgaa ggtacctgag cgcaggaacc atggtcttca ttgctgcctc agcaTTAGCG GAAGTGCCAC 000560 000561 GGGCCGGCTC CCAGGGGGCC AGAGTTTCCC AGGAACACCA TTGAGTACCA CTGAACTAGA GTCTGCAAGT TAAAGTAAGG 000640 000641 CAAGAAGGAA AACCGGAAAC AACTGTAAAA ACCTGACCTT TCGTCACCTT aatactggcc atcatttatc gagtgcttat 000720 000721 tatgtaacag acattgttct cagtgTGTGA GTGcagtgtt cctcaaacct aaatgtgggc ctgaatcgca gcggatcttg 000800 000801 gtaaaatgca gtttctcatt cagtacctct ggggtgcggc ctgagattct gcatttccaa caagctccca ggATactttg 000880 000881 tatagaaagg ctttggtgta ttaactaact cgatcttctt aataatccta tgaaatacta ctgctattcc cattttacag 000960 000961 atgaggaaac agaggttaag CATATATGAA CTTACATCAA AATAAATAGA CTGCAGGGCA AGGAGGGAGG GGAGAATAGT 001040 001041 GTGGGCAGTG TACAGTGCAG AAACAAAGTT CTAGGCAGAG GAAAAAGGAT TTACAGAAAG CCTGGCATAC AGGGCAGGGG 001120 001121 GACGGGGCCT GCACAcgggg ctgtttcacc gttagacgtt ataagcacag tacttggggc tatgggcttc ctgaaggtcc 001200 001201 caagtatttg agacctgaaa aaaatttatt gacacctaca taggaaaagt gaacttttaa attaataatt ccaaaattca 001280 001281 aatcacgaat tgtttcaaaa attttacatg atagaattca tatttagtaa gcgatacggg tatattttaa tgcatttgat 001360 001361 tttaaaaacg gggtagggcc tACTAAGAAC AGGCCAAGCC CTGGCCCCAG TGGGTTTGGA TATAATCCTG AGGGCAGCTG 001440 001441 GGAACCACTG AGAGAAGCAG Gagaatgttc tctgtggcta cagtgaggag aatggattgg agggaggcca gactggaggc 001520 001521 ccagtggcta gagaccagat aggcagttac agtcttccag actgcgagac aatCTCTCTT TAGTGCCAAG ATTAGCATAA 001600 001601 AATCATAGCA TTATATAACC CAATTATTCT TTGATTCCTG CATCCCCAAT CTGACTCAGC ATTCTAAATT TACTTAAGAT 001680 001681 CTGGGGACAA GGGTTTTTGG CAAATCCTTG AAGGCAAATG ATGTTACAGT CAATCagtat atgccttgag ccagacagac 001760 001761 atgggtacgg gcctcagttc tgctgcttgc tagctatgtg actttgcaca agtgatttaa cttctctggg ccttggattc 001840 001841 cttactggta acacgagcat aatcgattcc tcacagaatt aagtgagaaa actatgtatg taggacttct tatggagtgg 001920 001921 gtacttagaa ataaatggta gccgttatca ttTATGTGCC TTTGTTCTGA AATCTGCTTA AGTTTTCTCT AGGAAGTAAC 002000 002001 AG |
Predicted Small Protein
Name | NONHSAT025360_smProtein_1307:1375 |
Length | 23 |
Molecular weight | 2674.2719 |
Aromaticity | 0.181818181818 |
Instability index | 69.0181818182 |
Isoelectric point | 9.52288818359 |
Runs | 5 |
Runs residual | 0.00909090909091 |
Runs probability | 0.0332803391628 |
Amino acid sequence | MIEFIFSKRYGYILMHLILKTG |
Secondary structure | LEEEEELLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |