NONHSAT025970
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025970 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1926 nt |
Genomic location |
chr12-:4756240..4758165 |
Exon number |
1 |
Exons |
4756240..4758165 |
Genome context |
|
Sequence |
000001 GTTAAGAAGA AAGCTGGGAA AGTGAAGGAG AGGGGGAAGA AAGGAAGTGA AAAGACTTTG GCTGTtggaa tctcagatct 000080
000081 ggaataggct gtataggcta tttataatct ctaattgccg aggaacctga agttcagagt taaccagtga ctgactcagg 000160 000161 acatgcaaaa tggcaagacc cgaggtagaa gagctcacct ttcctgactc tcagtttcct gttccctGAA AATGTAAGCT 000240 000241 AAGCTGGCAG CCCTGGTGAG TCCGGAGGAA GAAGGAGGCG TAGCCCTCCG CGCTCAGGAG ATCCAGGGCC CAGGAGAGAG 000320 000321 AAAAGGGGGG ACAAGAACGA GGGGAAAAGT GGAGAAGAGA AACCAAAATA GGGTGTGTCC CAAGTAAATA AAtgtgcgtc 000400 000401 gagcccgcca agcacattct ctcataggga cccttgcgcc tgctgttcgc gtttcctgga atgcacactc aggtgtctgc 000480 000481 accagctcaa gtctctgctc aaaagtgacc tcttcggata aaacttctct gaccatccta tccaaggtgg taattattcc 000560 000561 accaattttt ggtttaagtt tatataccaa agcacttatc accaactagc ataTGAATCT aggagttctt aaccagaagt 000640 000641 gtgattcatg agtgggcttc gggaaatctg tgaacttcct gaaatattat gcaaatttag tggccatgtg tgcCATCTGA 000720 000721 ACATCTGTCT AAGGAGAAAC TGCAGATGGC TCTCTCTAGC GCAATGGCTT GTAATTTTTT CTTTAACTGT GGTCACCTTT 000800 000801 GAGAATCTGC ATTGTTCTAC AAAGAGCCAT CTAGAAACTG AGGAAATTCC AGGTTAGACT AAGCGCTTGG ATTTTAAAAT 000880 000881 ACTTTATTCT GGTCAACCTC TCCAGATTGC TGGGTAGGAG ATGGCAACCA GTGATCCTGT GAAACATACC TTAGGCTTAT 000960 000961 CAGAAAACCA CCTAGTTTGG GGAGGGCGGG TTCTTTCTAG ACTTGGTAAT CCTTCCAGTG CTTTGTTTTT TCAGGAAAAG 001040 001041 TATGTGTTTC TGGGATAGAC AAAAAGGCCT GTGATGAGTA GGGATGTAGA AGTTGCTTAT TACTAGGCTT GAAATCTTGG 001120 001121 CTGTTTCCAC TCTATCTTGC CCCTACTGTT TACTGAAGTG TCGCCTAACA AATTGAATTG GAAGAGAGAA AAAAACCTTG 001200 001201 AATTTCATCG GAGAAGCTTA GTAGTAACGC TACACTGTCA TATTTCTTGG CCTTATCCTA TGTTCACTTA ACACAATTTG 001280 001281 CTAATACTTG ATTTTGGGAC CAATATGGAT ACTAACATAC TTTCCTTGTT CGGATCAACA GATCCTGACT GTCATCAGCA 001360 001361 ACCTGCTTAC TCCTGTATAA CACTGCCAAT TATATAATTT AAAATCTCTA AGTTAAACAC TGCCTCATGT TCTCAGTTCT 001440 001441 AGTTTCAAGG TTGCATGGTG TAATTAAAAG AACACTGACt tttttttttt tcagagatgg ggtcttactg tattgcccag 001520 001521 gcttgtctca aattcctggg ctcaagacct cctctcacct tggcctccaa aagtgctggg attacaggca tgagtcactg 001600 001601 tgcccaacTg aaagaacacc gatttttaac acctagaata ctagatccca tccccagttt tgtcattcgt tagctgtgac 001680 001681 ctggacaagt ttctacactt gtctaacagg gtaaataaaa cctaccctgg tacctcaaaa ggttattatg agaatcgggt 001760 001761 ggcgtaatgg atgcaaagat gctttgtcac ccgtaaagtg ctataTGTAG GTCCATGCAG TACTATTCAA ATACCACTGA 001840 001841 AGTATCaaaa tcatagaatg ttagagctgg aagagatttt aggagctcag caagccccat tatttcaaag acgaagaggc 001920 001921 caggtg |
Predicted Small Protein
Name | NONHSAT025970_smProtein_647:856 |
Length | 70 |
Molecular weight | 7956.2767 |
Aromaticity | 0.0724637681159 |
Instability index | 81.3724637681 |
Isoelectric point | 6.38543701172 |
Runs | 12 |
Runs residual | 0.0345817190415 |
Runs probability | 0.0325987752458 |
Amino acid sequence | MSGLREICELPEILCKFSGHVCHLNICLRRNCRWLSLAQWLVIFSLTVVTFENLHCSTKS HLETEEIPG |
Secondary structure | LLLHHHHHHLHHHHHHLLLLEEEELEEELLLLHHHHHHHHHHHHEEEEEEELLLLLLLLL LLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL LLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo ooooooooo |