NONHSAT025973

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT025973

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1329 nt

Genomic location

chr12-:4809583..4829268

Exon number

4

Exons

4809583..4810345,4812479..4812606,4813344..4813463,4829031..4829268

Genome context

Sequence
000001 TGCCTTTTAA ACGCTTGTTC TGTCTCTTTC TAACTCCTTT GTCTCCGCCG GACTCGGGGT ATCTCCTGGG TGGTGTGGGG 000080
000081 CTGGTTTCCC CAACAGCTTT CTCTCCACCC AGCTTCATAG ATGACACCCT GCCTGCTAGG CCAGATGTTC TCCGGCCAAG 000160
000161 AACACTATTA TAGCTGCCTG GCTTCTCCCT GAGCAGCGTC AGGTGTGAGG AGTGCGCATG GCAGCTGCCC AGTGACAGAT 000240
000241 GGAATCTCCC TCTCTCACCC AGGCTGGAGT GCAATGGCAC AATCAGCTCA CTGCAACCTC CACCTCCCGG GTTCAAGTGA 000320
000321 TTCTTCTGCC TCAGCCTCCC GAGTAGCTGG GACTACAGCC TTCATTTCAG TCAACAACCA CATAACAGAT CATCAAAATA 000400
000401 CATAAAGCAA AAACTGACAG AACTAAAGTT AAATATACAT ATCTACAATT ATGGAGAGAA TAACAAACAA AAAAATAGAA 000480
000481 CAAAAATGTT CCACGCCTTG GTCAATGGTA CCACCAGCCA GCGAGGTTCC CAAGCCAAGA ACTTCGGAAG CATCCGTGAT 000560
000561 TCTTCATCTT CCACATCCAC TTTATCACCG GAAGCACGCA TTCAACTTTC TAAACATCCC TCAGACTGAC CCACATCTTT 000640
000641 CTATCCACTT TTCACATCTT GCTTGAATGA CTTCCCCAGG CCCAGCCAGT CTCCCGCCTC CAGCTCCGCC CCCTTCTGAC 000720
000721 TCCCTTTATG TGGTACAATC AGAGAGCCCT TCCCAAAGCA CAAATCTGCT TTCACTGCTT TGCTTCAAGC CCTTTCGTGG 000800
000801 CTCCTATTTC CAGCTGGATG AGGTCCAAGC CTCTTAACGT GCTGTACGTG TACATGCCTG ACCCCCGCTA CTTGACCAGC 000880
000881 CAAGTTTCTT CATAGCGCTG TGTCTTTGTT CCTCCTGCCT AGAATGTCCT TCCCCTTTTC TCTCGCTTCA TGGTGTGCCA 000960
000961 AACTCCTATC CTGTGAGATC CAGCTTACAC GTCAGCTTCC CCGTGATGCT TTTCCTAACT CCCTATTCAG CCAGTGAAGT 001040
001041 GCTCCCTGCG TTCCCATGTG GCTTATATCT CTGTAAAAGC TCCACAGAGC TGTTTTAATT TATCCGTTAA TGTACATGTC 001120
001121 TTCCCCACTA GACTTTTGCT CCTTAAAGTA TCTCCTTCAT CTCTGCTTTG CATAACCTAA CAGAGTTCAA CACATAGGAG 001200
001201 TGTCTTAATA AATGCTGAAT AAAATAATTA ATAAACAAAT GAAACAATAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 001280
001281 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT025973_smProtein_485:628
Length 48
Molecular weight 5020.4237
Aromaticity 0.0425531914894
Instability index 40.8978723404
Isoelectric point 9.97662353516
Runs 8
Runs residual 0.00393617021277
Runs probability 0.0365549372903
Amino acid sequence MFHALVNGTTSQRGSQAKNFGSIRDSSSSTSTLSPEARIQLSKHPSD
Secondary structure LEEEEELLLLLLLLLLLLLLEEEELLLLLLLLLLHHHEEEELLLLLL
PRMN -
PiMo -