NONHSAT026191
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026191 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2043 nt |
Genomic location |
chr12+:7060448..7062578 |
Exon number |
2 |
Exons |
7060448..7060683,7060772..7062578 |
Genome context |
|
Sequence |
000001 AGTACAAGTG AGTTCCCCCA AGGGGTCGGC CGCGCCTCTT CCTGTCCCCG CCCTGCCGGC TGCCCCAGGC CAGTGGAGTG 000080
000081 GCAGCCCCAG AACTGGGACC ACCGGGGGTG GTGAGGCGGC CCGGCACTGG GAGCTGCATC TGAGGCTTAG TCCCTGAGCT 000160 000161 CTCTGCCTGC CCAGACTAGC TGCACCTCCT CATTCCCTGC GCCCCCTTCC TCTCCGGAAG CCCCCAGGAT GGTGAGGTGG 000240 000241 TTTCACCGAG ACCTCAGTGG GCTGGATGCA GAGACCCTGC TCAAGGGCCG AGGTGTCCAC GGTAGCTTCC TGGCTCGGCC 000320 000321 CAGTCGCAAG AACCAGGGTG ACTTCTCGCT CTCCGTCAGG TAGGTGGGCC CCCCGCAACC CCGGGCATTT TGGCCACTCT 000400 000401 CTTGTGCCAT CCAGGCCCTG AACCACTCAT TCCTGGTTCC CCGTGGCAGT GCTGACTCCC CGTCTGTTCC CTTGCCCCCA 000480 000481 ACCCCCACAC TCCCCATCCC TGTCTGTGCC CACCCATGCC CATGTGTGCC CCCACCCAGG ACCTCAGCCG ATCCCTGCCC 000560 000561 TCCTGCCTCT ACTCCTGCAC CGACTGGCCT CACCGCCTGG TGCCCTGCAG GGTGGGGGAT CAGGTGACCC ATATTCGGAT 000640 000641 CCAGAACTCA GGGGATTTCT ATGACCTGTA TGGAGGGGAG AAGTTTGCGA CTCTGACAGA GCTGGTGGAG TACTACACTC 000720 000721 AGCAGCAGGG TGTCCTGCAG GACCGCGACG GCACCATCAT CCACCTCAAG TACCCGCTGA ACTGCTCCGA TCCCACTAGT 000800 000801 GAGAGGTGAG GGCTCCGCAC CCCCGCCATT CCCAAGCAGG GATGAGCCGG CTCCCACCCT GAACAGCCAG GGAGGCAGGG 000880 000881 AGACTGGCAG CCGGCGCTGC CTACCCTCCA TCCCCTCCCC TCCCTGCACC AGCTGGGGCT CTCAATGTCC CTCCTCCCTG 000960 000961 CTGTCCTGGG ACCTGGTGTC TCAGAGCCTA ACCTACCACC CTTTCCACCT AACCCCGAGG AAGCCACAGA AAGCTGCCTC 001040 001041 GCCCTACTCC GGGAGCCCTG GCCGCTGCAA CCCAGGTCcc actggagaca gggaggccac tgctggtggc cagcatgtcg 001120 001121 tgcaggccag ctctgttgtt agaaagctct tcttcctctg gaatcgagcc tgccttcctc cgtctgcccc tcacCCCAGC 001200 001201 ACATGTTAGG ACAGTGAGGA GCTGACACTG GGGTGAAGAT GGGGATGAAT GCTTGCCAAG ACACTTGATG CCTTGTCCCA 001280 001281 GCCGCCCCGT GGGGATGGGT CTGTCCTGTG GGGTCAAATA GGTCTCCGGC CCAAACAGAG ATCATTGAGA GCACGATGTG 001360 001361 AAGTGTTCAC CTGTGTAAAG TGTCTCACGC TGTCCCGGGC ACAGAGTAAT ACTCCAGGCA TTTCCTTCCT GTGGCCTCCC 001440 001441 CGACTCCTCC TGTGGTCTCC CAAAGGCATG GGCTGGGGGC TGGGGGCTCT GAATGCTCCT CATGACACCA TGGCTCCTTT 001520 001521 CAGCAGCCGC ATCTCAATGC CAGATCCCCT TAGAGTAAAG GGCAGCGGAA TAACGCTAGG GGGTTTTCAC ATGCACCCCT 001600 001601 GGGCCAAGCC GACTTGCCCT TGCCGTGGAT CCCTGCATTC ATGGATCGGT TATTGAAATG ATCGGGAACC TTGCTCCTGC 001680 001681 CAGCTTGCAG CCTCTCTGAG ATTCGGGCCT CCAAACTGCA tcaatatttt tggtcaaggc actgattgaa acttagagct 001760 001761 ggattcggtc acggtgcagc cctgtggccc acctgggagg cctcctttcC TGGATCGGCC TCCTTCAAGG CCTTCCCTCT 001840 001841 CTCTGTGAGC CTCACATGGC TGGCTCCGTG TCTGCCCCCT GCCCTTCCTC TTCCCCACCG CAACACTCAG GGGGCTTTTG 001920 001921 GCACCGAGAC CCTCTAAAGC TCATGTCCTC TCTTTCTCCT TGCCTCCAGC CAGGAGAGGA GGACGGGCTG ACCAGTGCCT 002000 002001 GGAGGTGGAA GAGAGGAGCA GGGCCCCAGG AGGCCCCTGC AGA |
Predicted Small Protein
Name | NONHSAT026191_smProtein_515:808 |
Length | 98 |
Molecular weight | 11085.3637 |
Aromaticity | 0.0927835051546 |
Instability index | 59.8805154639 |
Isoelectric point | 5.11444091797 |
Runs | 16 |
Runs residual | 0.0334096983582 |
Runs probability | 0.0384318141671 |
Amino acid sequence | MPMCAPTQDLSRSLPSCLYSCTDWPHRLVPCRVGDQVTHIRIQNSGDFYDLYGGEKFATL TELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSER |
Secondary structure | LLLLLLLLLLLLLLLLLLEELLLLLLLEEELLLLLEEEEEEEELLLLEEELLLLLLEEEH HHHHHHHHHLLLEEELLLLEEEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |