NONHSAT026191

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT026191

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2043 nt

Genomic location

chr12+:7060448..7062578

Exon number

2

Exons

7060448..7060683,7060772..7062578

Genome context

Sequence
000001 AGTACAAGTG AGTTCCCCCA AGGGGTCGGC CGCGCCTCTT CCTGTCCCCG CCCTGCCGGC TGCCCCAGGC CAGTGGAGTG 000080
000081 GCAGCCCCAG AACTGGGACC ACCGGGGGTG GTGAGGCGGC CCGGCACTGG GAGCTGCATC TGAGGCTTAG TCCCTGAGCT 000160
000161 CTCTGCCTGC CCAGACTAGC TGCACCTCCT CATTCCCTGC GCCCCCTTCC TCTCCGGAAG CCCCCAGGAT GGTGAGGTGG 000240
000241 TTTCACCGAG ACCTCAGTGG GCTGGATGCA GAGACCCTGC TCAAGGGCCG AGGTGTCCAC GGTAGCTTCC TGGCTCGGCC 000320
000321 CAGTCGCAAG AACCAGGGTG ACTTCTCGCT CTCCGTCAGG TAGGTGGGCC CCCCGCAACC CCGGGCATTT TGGCCACTCT 000400
000401 CTTGTGCCAT CCAGGCCCTG AACCACTCAT TCCTGGTTCC CCGTGGCAGT GCTGACTCCC CGTCTGTTCC CTTGCCCCCA 000480
000481 ACCCCCACAC TCCCCATCCC TGTCTGTGCC CACCCATGCC CATGTGTGCC CCCACCCAGG ACCTCAGCCG ATCCCTGCCC 000560
000561 TCCTGCCTCT ACTCCTGCAC CGACTGGCCT CACCGCCTGG TGCCCTGCAG GGTGGGGGAT CAGGTGACCC ATATTCGGAT 000640
000641 CCAGAACTCA GGGGATTTCT ATGACCTGTA TGGAGGGGAG AAGTTTGCGA CTCTGACAGA GCTGGTGGAG TACTACACTC 000720
000721 AGCAGCAGGG TGTCCTGCAG GACCGCGACG GCACCATCAT CCACCTCAAG TACCCGCTGA ACTGCTCCGA TCCCACTAGT 000800
000801 GAGAGGTGAG GGCTCCGCAC CCCCGCCATT CCCAAGCAGG GATGAGCCGG CTCCCACCCT GAACAGCCAG GGAGGCAGGG 000880
000881 AGACTGGCAG CCGGCGCTGC CTACCCTCCA TCCCCTCCCC TCCCTGCACC AGCTGGGGCT CTCAATGTCC CTCCTCCCTG 000960
000961 CTGTCCTGGG ACCTGGTGTC TCAGAGCCTA ACCTACCACC CTTTCCACCT AACCCCGAGG AAGCCACAGA AAGCTGCCTC 001040
001041 GCCCTACTCC GGGAGCCCTG GCCGCTGCAA CCCAGGTCcc actggagaca gggaggccac tgctggtggc cagcatgtcg 001120
001121 tgcaggccag ctctgttgtt agaaagctct tcttcctctg gaatcgagcc tgccttcctc cgtctgcccc tcacCCCAGC 001200
001201 ACATGTTAGG ACAGTGAGGA GCTGACACTG GGGTGAAGAT GGGGATGAAT GCTTGCCAAG ACACTTGATG CCTTGTCCCA 001280
001281 GCCGCCCCGT GGGGATGGGT CTGTCCTGTG GGGTCAAATA GGTCTCCGGC CCAAACAGAG ATCATTGAGA GCACGATGTG 001360
001361 AAGTGTTCAC CTGTGTAAAG TGTCTCACGC TGTCCCGGGC ACAGAGTAAT ACTCCAGGCA TTTCCTTCCT GTGGCCTCCC 001440
001441 CGACTCCTCC TGTGGTCTCC CAAAGGCATG GGCTGGGGGC TGGGGGCTCT GAATGCTCCT CATGACACCA TGGCTCCTTT 001520
001521 CAGCAGCCGC ATCTCAATGC CAGATCCCCT TAGAGTAAAG GGCAGCGGAA TAACGCTAGG GGGTTTTCAC ATGCACCCCT 001600
001601 GGGCCAAGCC GACTTGCCCT TGCCGTGGAT CCCTGCATTC ATGGATCGGT TATTGAAATG ATCGGGAACC TTGCTCCTGC 001680
001681 CAGCTTGCAG CCTCTCTGAG ATTCGGGCCT CCAAACTGCA tcaatatttt tggtcaaggc actgattgaa acttagagct 001760
001761 ggattcggtc acggtgcagc cctgtggccc acctgggagg cctcctttcC TGGATCGGCC TCCTTCAAGG CCTTCCCTCT 001840
001841 CTCTGTGAGC CTCACATGGC TGGCTCCGTG TCTGCCCCCT GCCCTTCCTC TTCCCCACCG CAACACTCAG GGGGCTTTTG 001920
001921 GCACCGAGAC CCTCTAAAGC TCATGTCCTC TCTTTCTCCT TGCCTCCAGC CAGGAGAGGA GGACGGGCTG ACCAGTGCCT 002000
002001 GGAGGTGGAA GAGAGGAGCA GGGCCCCAGG AGGCCCCTGC AGA
[back to top]

Predicted Small Protein

Name NONHSAT026191_smProtein_515:808
Length 98
Molecular weight 11085.3637
Aromaticity 0.0927835051546
Instability index 59.8805154639
Isoelectric point 5.11444091797
Runs 16
Runs residual 0.0334096983582
Runs probability 0.0384318141671
Amino acid sequence MPMCAPTQDLSRSLPSCLYSCTDWPHRLVPCRVGDQVTHIRIQNSGDFYDLYGGEKFATL
TELVEYYTQQQGVLQDRDGTIIHLKYPLNCSDPTSER
Secondary structure LLLLLLLLLLLLLLLLLLEELLLLLLLEEELLLLLEEEEEEEELLLLEEELLLLLLEEEH
HHHHHHHHHLLLEEELLLLEEEEEELLLLLLLLLLLL
PRMN -
PiMo -